Gene : Cagra.0301s0097 C. grandiflora v1.1
Defline:  (1 of 2) PTHR37173:SF1 - HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN Genomic Order:  97
Name:  ? Cagra.0301s0097 Secondary Identifier:  ? PAC:28907817
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0301s0097 0.5kb upstream 0.5kb upstream 2538 true Scaffold301: 365098-367635 Capsella grandiflora
Cagra.0301s0097 0.5kb upstream 0.5kb upstream 500 false Scaffold301: 365098-365597 Capsella grandiflora
Cagra.0301s0097 0.5kb downstream 0.5kb downstream 2538 true Scaffold301: 365598-368135 Capsella grandiflora
Cagra.0301s0097 0.5kb downstream 0.5kb downstream 500 false Scaffold301: 367636-368135 Capsella grandiflora
Cagra.0301s0097 1.0kb upstream 1.0kb upstream 3038 true Scaffold301: 364598-367635 Capsella grandiflora
Cagra.0301s0097 1.0kb upstream 1.0kb upstream 1000 false Scaffold301: 364598-365597 Capsella grandiflora
Cagra.0301s0097 1.0kb downstream 1.0kb downstream 3038 true Scaffold301: 365598-368635 Capsella grandiflora
Cagra.0301s0097 1.0kb downstream 1.0kb downstream 1000 false Scaffold301: 367636-368635 Capsella grandiflora
Cagra.0301s0097 2.0kb upstream 2.0kb upstream 4038 true Scaffold301: 363598-367635 Capsella grandiflora
Cagra.0301s0097 2.0kb upstream 2.0kb upstream 2000 false Scaffold301: 363598-365597 Capsella grandiflora
Cagra.0301s0097 2.0kb downstream 2.0kb downstream 4038 true Scaffold301: 365598-369635 Capsella grandiflora
Cagra.0301s0097 2.0kb downstream 2.0kb downstream 2000 false Scaffold301: 367636-369635 Capsella grandiflora
Cagra.0301s0097 5.0kb upstream 5.0kb upstream 7038 true Scaffold301: 360598-367635 Capsella grandiflora
Cagra.0301s0097 5.0kb upstream 5.0kb upstream 5000 false Scaffold301: 360598-365597 Capsella grandiflora
Cagra.0301s0097 5.0kb downstream 5.0kb downstream 7038 true Scaffold301: 365598-372635 Capsella grandiflora
Cagra.0301s0097 5.0kb downstream 5.0kb downstream 5000 false Scaffold301: 367636-372635 Capsella grandiflora
Cagra.0301s0097 10.0kb upstream 10.0kb upstream 12038 true Scaffold301: 355598-367635 Capsella grandiflora
Cagra.0301s0097 10.0kb upstream 10.0kb upstream 10000 false Scaffold301: 355598-365597 Capsella grandiflora
Cagra.0301s0097 10.0kb downstream 10.0kb downstream 12038 true Scaffold301: 365598-377635 Capsella grandiflora
Cagra.0301s0097 10.0kb downstream 10.0kb downstream 10000 false Scaffold301: 367636-377635 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122363572 5261 Brassicaceae View MSA
123834376 5264 Brassicales-Malvales View MSA
124341089 5266 SBM View MSA
124250614 5268 Malvidae View MSA
124065426 5270 Rosid View MSA
123746195 5271 Pentapetalae View MSA
122787235 5272 Eudicot View MSA
122045095 5273 Angiosperm View MSA
121345714 5274 Embryophyte View MSA
123425917 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain