Gene : Cagra.0301s0020 C. grandiflora v1.1
Defline:  (1 of 1) PTHR31500:SF0 - AT HOOK MOTIF DNA-BINDING FAMILY PROTEIN Genomic Order:  20
Name:  ? Cagra.0301s0020 Secondary Identifier:  ? PAC:28907835
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0301s0020 0.5kb upstream 0.5kb upstream 2950 true Scaffold301: 63177-66126 Capsella grandiflora
Cagra.0301s0020 0.5kb upstream 0.5kb upstream 500 false Scaffold301: 65627-66126 Capsella grandiflora
Cagra.0301s0020 0.5kb downstream 0.5kb downstream 2950 true Scaffold301: 62677-65626 Capsella grandiflora
Cagra.0301s0020 0.5kb downstream 0.5kb downstream 500 false Scaffold301: 62677-63176 Capsella grandiflora
Cagra.0301s0020 1.0kb upstream 1.0kb upstream 3450 true Scaffold301: 63177-66626 Capsella grandiflora
Cagra.0301s0020 1.0kb upstream 1.0kb upstream 1000 false Scaffold301: 65627-66626 Capsella grandiflora
Cagra.0301s0020 1.0kb downstream 1.0kb downstream 3450 true Scaffold301: 62177-65626 Capsella grandiflora
Cagra.0301s0020 1.0kb downstream 1.0kb downstream 1000 false Scaffold301: 62177-63176 Capsella grandiflora
Cagra.0301s0020 2.0kb upstream 2.0kb upstream 4450 true Scaffold301: 63177-67626 Capsella grandiflora
Cagra.0301s0020 2.0kb upstream 2.0kb upstream 2000 false Scaffold301: 65627-67626 Capsella grandiflora
Cagra.0301s0020 2.0kb downstream 2.0kb downstream 4450 true Scaffold301: 61177-65626 Capsella grandiflora
Cagra.0301s0020 2.0kb downstream 2.0kb downstream 2000 false Scaffold301: 61177-63176 Capsella grandiflora
Cagra.0301s0020 5.0kb upstream 5.0kb upstream 7450 true Scaffold301: 63177-70626 Capsella grandiflora
Cagra.0301s0020 5.0kb upstream 5.0kb upstream 5000 false Scaffold301: 65627-70626 Capsella grandiflora
Cagra.0301s0020 5.0kb downstream 5.0kb downstream 7450 true Scaffold301: 58177-65626 Capsella grandiflora
Cagra.0301s0020 5.0kb downstream 5.0kb downstream 5000 false Scaffold301: 58177-63176 Capsella grandiflora
Cagra.0301s0020 10.0kb upstream 10.0kb upstream 12450 true Scaffold301: 63177-75626 Capsella grandiflora
Cagra.0301s0020 10.0kb upstream 10.0kb upstream 10000 false Scaffold301: 65627-75626 Capsella grandiflora
Cagra.0301s0020 10.0kb downstream 10.0kb downstream 12450 true Scaffold301: 53177-65626 Capsella grandiflora
Cagra.0301s0020 10.0kb downstream 10.0kb downstream 10000 false Scaffold301: 53177-63176 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122377471 5261 Brassicaceae View MSA
123834471 5264 Brassicales-Malvales View MSA
124336935 5266 SBM View MSA
124238398 5268 Malvidae View MSA
124069070 5270 Rosid View MSA
123753724 5271 Pentapetalae View MSA
122796118 5272 Eudicot View MSA
122049850 5273 Angiosperm View MSA
121348420 5274 Embryophyte View MSA
123380859 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain