Gene : Cagra.0288s0011 C. grandiflora v1.1
Defline:  (1 of 1) PTHR23406//PTHR23406:SF11 - MALIC ENZYME-RELATED Genomic Order:  11
Name:  ? Cagra.0288s0011 Secondary Identifier:  ? PAC:28902585
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora GLUCONEO-PWY Capsella grandiflora pathologic  
Cgrandiflora PWY-241 Capsella grandiflora pathologic  
Cgrandiflora PWY-7117 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0288s0011 0.5kb upstream 0.5kb upstream 4625 true Scaffold288: 30852-35476 Capsella grandiflora
Cagra.0288s0011 0.5kb upstream 0.5kb upstream 500 false Scaffold288: 30852-31351 Capsella grandiflora
Cagra.0288s0011 0.5kb downstream 0.5kb downstream 4625 true Scaffold288: 31352-35976 Capsella grandiflora
Cagra.0288s0011 0.5kb downstream 0.5kb downstream 500 false Scaffold288: 35477-35976 Capsella grandiflora
Cagra.0288s0011 1.0kb upstream 1.0kb upstream 5125 true Scaffold288: 30352-35476 Capsella grandiflora
Cagra.0288s0011 1.0kb upstream 1.0kb upstream 1000 false Scaffold288: 30352-31351 Capsella grandiflora
Cagra.0288s0011 1.0kb downstream 1.0kb downstream 5125 true Scaffold288: 31352-36476 Capsella grandiflora
Cagra.0288s0011 1.0kb downstream 1.0kb downstream 1000 false Scaffold288: 35477-36476 Capsella grandiflora
Cagra.0288s0011 2.0kb upstream 2.0kb upstream 6125 true Scaffold288: 29352-35476 Capsella grandiflora
Cagra.0288s0011 2.0kb upstream 2.0kb upstream 2000 false Scaffold288: 29352-31351 Capsella grandiflora
Cagra.0288s0011 2.0kb downstream 2.0kb downstream 6125 true Scaffold288: 31352-37476 Capsella grandiflora
Cagra.0288s0011 2.0kb downstream 2.0kb downstream 2000 false Scaffold288: 35477-37476 Capsella grandiflora
Cagra.0288s0011 5.0kb upstream 5.0kb upstream 9125 true Scaffold288: 26352-35476 Capsella grandiflora
Cagra.0288s0011 5.0kb upstream 5.0kb upstream 5000 false Scaffold288: 26352-31351 Capsella grandiflora
Cagra.0288s0011 5.0kb downstream 5.0kb downstream 9125 true Scaffold288: 31352-40476 Capsella grandiflora
Cagra.0288s0011 5.0kb downstream 5.0kb downstream 5000 false Scaffold288: 35477-40476 Capsella grandiflora
Cagra.0288s0011 10.0kb upstream 10.0kb upstream 14125 true Scaffold288: 21352-35476 Capsella grandiflora
Cagra.0288s0011 10.0kb upstream 10.0kb upstream 10000 false Scaffold288: 21352-31351 Capsella grandiflora
Cagra.0288s0011 10.0kb downstream 10.0kb downstream 11575 true Scaffold288: 31352-42926 Capsella grandiflora
Cagra.0288s0011 10.0kb downstream 10.0kb downstream 7450 false Scaffold288: 35477-42926 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122371392 5261 Brassicaceae View MSA
123831539 5264 Brassicales-Malvales View MSA
124336457 5266 SBM View MSA
124242817 5268 Malvidae View MSA
124068705 5270 Rosid View MSA
123751350 5271 Pentapetalae View MSA
122794130 5272 Eudicot View MSA
122042224 5273 Angiosperm View MSA
121345569 5274 Embryophyte View MSA
123428715 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain