Gene : Cagra.0257s0002 C. grandiflora v1.1
Defline:  (1 of 1) PTHR10836:SF39 - GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE GAPB, CHLOROPLASTIC Genomic Order:  2
Name:  ? Cagra.0257s0002 Secondary Identifier:  ? PAC:28894484
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Sequence Feature Displayer

Ontology Annotation Displayer

9 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora ANAEROFRUCAT-PWY Capsella grandiflora pathologic  
Cgrandiflora ANAGLYCOLYSIS-PWY Capsella grandiflora pathologic  
Cgrandiflora CALVIN-PWY Capsella grandiflora pathologic  
Cgrandiflora GLUCONEO-PWY Capsella grandiflora pathologic  
Cgrandiflora PHOTOALL-PWY Capsella grandiflora pathologic  
Cgrandiflora PWY-1042 Capsella grandiflora pathologic  
Cgrandiflora PWY-5464 Capsella grandiflora pathologic  
Cgrandiflora PWY66-399 Capsella grandiflora pathologic  
Cgrandiflora SUCSYN-PWY Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0257s0002 0.5kb upstream 0.5kb upstream 2906 true Scaffold257: 10481-13386 Capsella grandiflora
Cagra.0257s0002 0.5kb upstream 0.5kb upstream 500 false Scaffold257: 12887-13386 Capsella grandiflora
Cagra.0257s0002 0.5kb downstream 0.5kb downstream 2906 true Scaffold257: 9981-12886 Capsella grandiflora
Cagra.0257s0002 0.5kb downstream 0.5kb downstream 500 false Scaffold257: 9981-10480 Capsella grandiflora
Cagra.0257s0002 1.0kb upstream 1.0kb upstream 3406 true Scaffold257: 10481-13886 Capsella grandiflora
Cagra.0257s0002 1.0kb upstream 1.0kb upstream 1000 false Scaffold257: 12887-13886 Capsella grandiflora
Cagra.0257s0002 1.0kb downstream 1.0kb downstream 3406 true Scaffold257: 9481-12886 Capsella grandiflora
Cagra.0257s0002 1.0kb downstream 1.0kb downstream 1000 false Scaffold257: 9481-10480 Capsella grandiflora
Cagra.0257s0002 2.0kb upstream 2.0kb upstream 4406 true Scaffold257: 10481-14886 Capsella grandiflora
Cagra.0257s0002 2.0kb upstream 2.0kb upstream 2000 false Scaffold257: 12887-14886 Capsella grandiflora
Cagra.0257s0002 2.0kb downstream 2.0kb downstream 4406 true Scaffold257: 8481-12886 Capsella grandiflora
Cagra.0257s0002 2.0kb downstream 2.0kb downstream 2000 false Scaffold257: 8481-10480 Capsella grandiflora
Cagra.0257s0002 5.0kb upstream 5.0kb upstream 7406 true Scaffold257: 10481-17886 Capsella grandiflora
Cagra.0257s0002 5.0kb upstream 5.0kb upstream 5000 false Scaffold257: 12887-17886 Capsella grandiflora
Cagra.0257s0002 5.0kb downstream 5.0kb downstream 7406 true Scaffold257: 5481-12886 Capsella grandiflora
Cagra.0257s0002 5.0kb downstream 5.0kb downstream 5000 false Scaffold257: 5481-10480 Capsella grandiflora
Cagra.0257s0002 10.0kb upstream 10.0kb upstream 8257 true Scaffold257: 10481-18737 Capsella grandiflora
Cagra.0257s0002 10.0kb upstream 10.0kb upstream 5851 false Scaffold257: 12887-18737 Capsella grandiflora
Cagra.0257s0002 10.0kb downstream 10.0kb downstream 12406 true Scaffold257: 481-12886 Capsella grandiflora
Cagra.0257s0002 10.0kb downstream 10.0kb downstream 10000 false Scaffold257: 481-10480 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122369088 5261 Brassicaceae View MSA
123835390 5264 Brassicales-Malvales View MSA
124344807 5266 SBM View MSA
124241337 5268 Malvidae View MSA
124062072 5270 Rosid View MSA
123746514 5271 Pentapetalae View MSA
122796484 5272 Eudicot View MSA
122047323 5273 Angiosperm View MSA
121310728 5274 Embryophyte View MSA
123425156 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain