Gene : Cagra.0228s0060 C. grandiflora v1.1
Defline:  (1 of 1) PTHR10209:SF152 - 1-AMINOCYCLOPROPANE-1-CARBOXYLATE OXIDASE-RELATED Genomic Order:  60
Name:  ? Cagra.0228s0060 Secondary Identifier:  ? PAC:28914678
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

5 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY1F-823 Capsella grandiflora pathologic  
Cgrandiflora PWY1F-FLAVSYN Capsella grandiflora pathologic  
Cgrandiflora PWY-5059 Capsella grandiflora pathologic  
Cgrandiflora PWY-5152 Capsella grandiflora pathologic  
Cgrandiflora PWY-6787 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0228s0060 0.5kb upstream 0.5kb upstream 1957 true Scaffold228: 230266-232222 Capsella grandiflora
Cagra.0228s0060 0.5kb upstream 0.5kb upstream 500 false Scaffold228: 230266-230765 Capsella grandiflora
Cagra.0228s0060 0.5kb downstream 0.5kb downstream 1957 true Scaffold228: 230766-232722 Capsella grandiflora
Cagra.0228s0060 0.5kb downstream 0.5kb downstream 500 false Scaffold228: 232223-232722 Capsella grandiflora
Cagra.0228s0060 1.0kb upstream 1.0kb upstream 2457 true Scaffold228: 229766-232222 Capsella grandiflora
Cagra.0228s0060 1.0kb upstream 1.0kb upstream 1000 false Scaffold228: 229766-230765 Capsella grandiflora
Cagra.0228s0060 1.0kb downstream 1.0kb downstream 2457 true Scaffold228: 230766-233222 Capsella grandiflora
Cagra.0228s0060 1.0kb downstream 1.0kb downstream 1000 false Scaffold228: 232223-233222 Capsella grandiflora
Cagra.0228s0060 2.0kb upstream 2.0kb upstream 3457 true Scaffold228: 228766-232222 Capsella grandiflora
Cagra.0228s0060 2.0kb upstream 2.0kb upstream 2000 false Scaffold228: 228766-230765 Capsella grandiflora
Cagra.0228s0060 2.0kb downstream 2.0kb downstream 3457 true Scaffold228: 230766-234222 Capsella grandiflora
Cagra.0228s0060 2.0kb downstream 2.0kb downstream 2000 false Scaffold228: 232223-234222 Capsella grandiflora
Cagra.0228s0060 5.0kb upstream 5.0kb upstream 6457 true Scaffold228: 225766-232222 Capsella grandiflora
Cagra.0228s0060 5.0kb upstream 5.0kb upstream 5000 false Scaffold228: 225766-230765 Capsella grandiflora
Cagra.0228s0060 5.0kb downstream 5.0kb downstream 6457 true Scaffold228: 230766-237222 Capsella grandiflora
Cagra.0228s0060 5.0kb downstream 5.0kb downstream 5000 false Scaffold228: 232223-237222 Capsella grandiflora
Cagra.0228s0060 10.0kb upstream 10.0kb upstream 11457 true Scaffold228: 220766-232222 Capsella grandiflora
Cagra.0228s0060 10.0kb upstream 10.0kb upstream 10000 false Scaffold228: 220766-230765 Capsella grandiflora
Cagra.0228s0060 10.0kb downstream 10.0kb downstream 11457 true Scaffold228: 230766-242222 Capsella grandiflora
Cagra.0228s0060 10.0kb downstream 10.0kb downstream 10000 false Scaffold228: 232223-242222 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122333169 5261 Brassicaceae Singleton cluster - no MSA
123838162 5264 Brassicales-Malvales View MSA
124349798 5266 SBM View MSA
124248174 5268 Malvidae View MSA
124071702 5270 Rosid View MSA
123753331 5271 Pentapetalae View MSA
122797647 5272 Eudicot View MSA
122051611 5273 Angiosperm View MSA
123429101 5275 Viridiplantae View MSA
121351374 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain