Gene : Cagra.0244s0002 C. grandiflora v1.1
Defline:  (1 of 2) PTHR23382//PTHR23382:SF7 - MALATE DEHYDROGENASE Genomic Order:  2
Name:  ? Cagra.0244s0002 Secondary Identifier:  ? PAC:28895572
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Sequence Feature Displayer

Ontology Annotation Displayer

7 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora GLUCONEO-PWY Capsella grandiflora pathologic  
Cgrandiflora GLYOXYLATE-BYPASS Capsella grandiflora pathologic  
Cgrandiflora PWY-5464 Capsella grandiflora pathologic  
Cgrandiflora PWY-561 Capsella grandiflora pathologic  
Cgrandiflora PWY-5690 Capsella grandiflora pathologic  
Cgrandiflora PWY66-399 Capsella grandiflora pathologic  
Cgrandiflora PWY-7115 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0244s0002 0.5kb upstream 0.5kb upstream 2850 true Scaffold244: 3110-5959 Capsella grandiflora
Cagra.0244s0002 0.5kb upstream 0.5kb upstream 500 false Scaffold244: 3110-3609 Capsella grandiflora
Cagra.0244s0002 0.5kb downstream 0.5kb downstream 2850 true Scaffold244: 3610-6459 Capsella grandiflora
Cagra.0244s0002 0.5kb downstream 0.5kb downstream 500 false Scaffold244: 5960-6459 Capsella grandiflora
Cagra.0244s0002 1.0kb upstream 1.0kb upstream 3350 true Scaffold244: 2610-5959 Capsella grandiflora
Cagra.0244s0002 1.0kb upstream 1.0kb upstream 1000 false Scaffold244: 2610-3609 Capsella grandiflora
Cagra.0244s0002 1.0kb downstream 1.0kb downstream 3350 true Scaffold244: 3610-6959 Capsella grandiflora
Cagra.0244s0002 1.0kb downstream 1.0kb downstream 1000 false Scaffold244: 5960-6959 Capsella grandiflora
Cagra.0244s0002 2.0kb upstream 2.0kb upstream 4350 true Scaffold244: 1610-5959 Capsella grandiflora
Cagra.0244s0002 2.0kb upstream 2.0kb upstream 2000 false Scaffold244: 1610-3609 Capsella grandiflora
Cagra.0244s0002 2.0kb downstream 2.0kb downstream 4350 true Scaffold244: 3610-7959 Capsella grandiflora
Cagra.0244s0002 2.0kb downstream 2.0kb downstream 2000 false Scaffold244: 5960-7959 Capsella grandiflora
Cagra.0244s0002 5.0kb upstream 5.0kb upstream 5959 true Scaffold244: 1-5959 Capsella grandiflora
Cagra.0244s0002 5.0kb upstream 5.0kb upstream 3609 false Scaffold244: 1-3609 Capsella grandiflora
Cagra.0244s0002 5.0kb downstream 5.0kb downstream 7350 true Scaffold244: 3610-10959 Capsella grandiflora
Cagra.0244s0002 5.0kb downstream 5.0kb downstream 5000 false Scaffold244: 5960-10959 Capsella grandiflora
Cagra.0244s0002 10.0kb upstream 10.0kb upstream 5959 true Scaffold244: 1-5959 Capsella grandiflora
Cagra.0244s0002 10.0kb upstream 10.0kb upstream 3609 false Scaffold244: 1-3609 Capsella grandiflora
Cagra.0244s0002 10.0kb downstream 10.0kb downstream 12350 true Scaffold244: 3610-15959 Capsella grandiflora
Cagra.0244s0002 10.0kb downstream 10.0kb downstream 10000 false Scaffold244: 5960-15959 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122379151 5261 Brassicaceae View MSA
123832560 5264 Brassicales-Malvales View MSA
124339900 5266 SBM View MSA
124244988 5268 Malvidae View MSA
124064013 5270 Rosid View MSA
123739138 5271 Pentapetalae View MSA
122789281 5272 Eudicot View MSA
122050336 5273 Angiosperm View MSA
121345674 5274 Embryophyte View MSA
123426378 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain