Gene : Cagra.0228s0048 C. grandiflora v1.1
Defline:  (1 of 3) PTHR11817//PTHR11817:SF33 - PYRUVATE KINASE Genomic Order:  48
Name:  ? Cagra.0228s0048 Secondary Identifier:  ? PAC:28914656
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Sequence Feature Displayer

Ontology Annotation Displayer

5 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora ANAEROFRUCAT-PWY Capsella grandiflora pathologic  
Cgrandiflora ANAGLYCOLYSIS-PWY Capsella grandiflora pathologic  
Cgrandiflora PWY-1042 Capsella grandiflora pathologic  
Cgrandiflora PWY-5464 Capsella grandiflora pathologic  
Cgrandiflora PWY-5723 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0228s0048 0.5kb upstream 0.5kb upstream 2412 true Scaffold228: 189788-192199 Capsella grandiflora
Cagra.0228s0048 0.5kb upstream 0.5kb upstream 500 false Scaffold228: 189788-190287 Capsella grandiflora
Cagra.0228s0048 0.5kb downstream 0.5kb downstream 2412 true Scaffold228: 190288-192699 Capsella grandiflora
Cagra.0228s0048 0.5kb downstream 0.5kb downstream 500 false Scaffold228: 192200-192699 Capsella grandiflora
Cagra.0228s0048 1.0kb upstream 1.0kb upstream 2912 true Scaffold228: 189288-192199 Capsella grandiflora
Cagra.0228s0048 1.0kb upstream 1.0kb upstream 1000 false Scaffold228: 189288-190287 Capsella grandiflora
Cagra.0228s0048 1.0kb downstream 1.0kb downstream 2912 true Scaffold228: 190288-193199 Capsella grandiflora
Cagra.0228s0048 1.0kb downstream 1.0kb downstream 1000 false Scaffold228: 192200-193199 Capsella grandiflora
Cagra.0228s0048 2.0kb upstream 2.0kb upstream 3912 true Scaffold228: 188288-192199 Capsella grandiflora
Cagra.0228s0048 2.0kb upstream 2.0kb upstream 2000 false Scaffold228: 188288-190287 Capsella grandiflora
Cagra.0228s0048 2.0kb downstream 2.0kb downstream 3912 true Scaffold228: 190288-194199 Capsella grandiflora
Cagra.0228s0048 2.0kb downstream 2.0kb downstream 2000 false Scaffold228: 192200-194199 Capsella grandiflora
Cagra.0228s0048 5.0kb upstream 5.0kb upstream 6912 true Scaffold228: 185288-192199 Capsella grandiflora
Cagra.0228s0048 5.0kb upstream 5.0kb upstream 5000 false Scaffold228: 185288-190287 Capsella grandiflora
Cagra.0228s0048 5.0kb downstream 5.0kb downstream 6912 true Scaffold228: 190288-197199 Capsella grandiflora
Cagra.0228s0048 5.0kb downstream 5.0kb downstream 5000 false Scaffold228: 192200-197199 Capsella grandiflora
Cagra.0228s0048 10.0kb upstream 10.0kb upstream 11912 true Scaffold228: 180288-192199 Capsella grandiflora
Cagra.0228s0048 10.0kb upstream 10.0kb upstream 10000 false Scaffold228: 180288-190287 Capsella grandiflora
Cagra.0228s0048 10.0kb downstream 10.0kb downstream 11912 true Scaffold228: 190288-202199 Capsella grandiflora
Cagra.0228s0048 10.0kb downstream 10.0kb downstream 10000 false Scaffold228: 192200-202199 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121780529 5273 Angiosperm View MSA
122333167 5261 Brassicaceae Singleton cluster - no MSA
123774146 5264 Brassicales-Malvales Singleton cluster - no MSA
124272599 5266 SBM Singleton cluster - no MSA
124249874 5268 Malvidae View MSA
124038567 5270 Rosid View MSA
123746594 5271 Pentapetalae View MSA
122771984 5272 Eudicot View MSA
121052138 5274 Embryophyte View MSA
123092194 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain