Gene : Cagra.0216s0012 C. grandiflora v1.1
Defline:  (1 of 4) 1.5.3.16//1.5.3.17 - Spermine oxidase / SMO // Non-specific polyamine oxidase / Polyamine oxidase Genomic Order:  12
Name:  ? Cagra.0216s0012 Secondary Identifier:  ? PAC:28914370
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-6441 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0216s0012 0.5kb upstream 0.5kb upstream 3346 true Scaffold216: 47398-50743 Capsella grandiflora
Cagra.0216s0012 0.5kb upstream 0.5kb upstream 500 false Scaffold216: 50244-50743 Capsella grandiflora
Cagra.0216s0012 0.5kb downstream 0.5kb downstream 3346 true Scaffold216: 46898-50243 Capsella grandiflora
Cagra.0216s0012 0.5kb downstream 0.5kb downstream 500 false Scaffold216: 46898-47397 Capsella grandiflora
Cagra.0216s0012 1.0kb upstream 1.0kb upstream 3846 true Scaffold216: 47398-51243 Capsella grandiflora
Cagra.0216s0012 1.0kb upstream 1.0kb upstream 1000 false Scaffold216: 50244-51243 Capsella grandiflora
Cagra.0216s0012 1.0kb downstream 1.0kb downstream 3846 true Scaffold216: 46398-50243 Capsella grandiflora
Cagra.0216s0012 1.0kb downstream 1.0kb downstream 1000 false Scaffold216: 46398-47397 Capsella grandiflora
Cagra.0216s0012 2.0kb upstream 2.0kb upstream 4846 true Scaffold216: 47398-52243 Capsella grandiflora
Cagra.0216s0012 2.0kb upstream 2.0kb upstream 2000 false Scaffold216: 50244-52243 Capsella grandiflora
Cagra.0216s0012 2.0kb downstream 2.0kb downstream 4846 true Scaffold216: 45398-50243 Capsella grandiflora
Cagra.0216s0012 2.0kb downstream 2.0kb downstream 2000 false Scaffold216: 45398-47397 Capsella grandiflora
Cagra.0216s0012 5.0kb upstream 5.0kb upstream 7846 true Scaffold216: 47398-55243 Capsella grandiflora
Cagra.0216s0012 5.0kb upstream 5.0kb upstream 5000 false Scaffold216: 50244-55243 Capsella grandiflora
Cagra.0216s0012 5.0kb downstream 5.0kb downstream 7846 true Scaffold216: 42398-50243 Capsella grandiflora
Cagra.0216s0012 5.0kb downstream 5.0kb downstream 5000 false Scaffold216: 42398-47397 Capsella grandiflora
Cagra.0216s0012 10.0kb upstream 10.0kb upstream 12846 true Scaffold216: 47398-60243 Capsella grandiflora
Cagra.0216s0012 10.0kb upstream 10.0kb upstream 10000 false Scaffold216: 50244-60243 Capsella grandiflora
Cagra.0216s0012 10.0kb downstream 10.0kb downstream 12846 true Scaffold216: 37398-50243 Capsella grandiflora
Cagra.0216s0012 10.0kb downstream 10.0kb downstream 10000 false Scaffold216: 37398-47397 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122369311 5261 Brassicaceae View MSA
123799754 5264 Brassicales-Malvales View MSA
124297243 5266 SBM View MSA
124244923 5268 Malvidae View MSA
124065173 5270 Rosid View MSA
123745734 5271 Pentapetalae View MSA
122788869 5272 Eudicot View MSA
122044597 5273 Angiosperm View MSA
121345919 5274 Embryophyte View MSA
123428250 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain