Gene : Cagra.0433s0003 C. grandiflora v1.1
Defline:  (1 of 4) PF09177 - Syntaxin 6, N-terminal (Syntaxin-6_N) Genomic Order:  3
Name:  ? Cagra.0433s0003 Secondary Identifier:  ? PAC:28915606
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0433s0003 0.5kb upstream 0.5kb upstream 2379 true Scaffold433: 5847-8225 Capsella grandiflora
Cagra.0433s0003 0.5kb upstream 0.5kb upstream 500 false Scaffold433: 5847-6346 Capsella grandiflora
Cagra.0433s0003 0.5kb downstream 0.5kb downstream 2379 true Scaffold433: 6347-8725 Capsella grandiflora
Cagra.0433s0003 0.5kb downstream 0.5kb downstream 500 false Scaffold433: 8226-8725 Capsella grandiflora
Cagra.0433s0003 1.0kb upstream 1.0kb upstream 2879 true Scaffold433: 5347-8225 Capsella grandiflora
Cagra.0433s0003 1.0kb upstream 1.0kb upstream 1000 false Scaffold433: 5347-6346 Capsella grandiflora
Cagra.0433s0003 1.0kb downstream 1.0kb downstream 2879 true Scaffold433: 6347-9225 Capsella grandiflora
Cagra.0433s0003 1.0kb downstream 1.0kb downstream 1000 false Scaffold433: 8226-9225 Capsella grandiflora
Cagra.0433s0003 2.0kb upstream 2.0kb upstream 3879 true Scaffold433: 4347-8225 Capsella grandiflora
Cagra.0433s0003 2.0kb upstream 2.0kb upstream 2000 false Scaffold433: 4347-6346 Capsella grandiflora
Cagra.0433s0003 2.0kb downstream 2.0kb downstream 3879 true Scaffold433: 6347-10225 Capsella grandiflora
Cagra.0433s0003 2.0kb downstream 2.0kb downstream 2000 false Scaffold433: 8226-10225 Capsella grandiflora
Cagra.0433s0003 5.0kb upstream 5.0kb upstream 6879 true Scaffold433: 1347-8225 Capsella grandiflora
Cagra.0433s0003 5.0kb upstream 5.0kb upstream 5000 false Scaffold433: 1347-6346 Capsella grandiflora
Cagra.0433s0003 5.0kb downstream 5.0kb downstream 6879 true Scaffold433: 6347-13225 Capsella grandiflora
Cagra.0433s0003 5.0kb downstream 5.0kb downstream 5000 false Scaffold433: 8226-13225 Capsella grandiflora
Cagra.0433s0003 10.0kb upstream 10.0kb upstream 8225 true Scaffold433: 1-8225 Capsella grandiflora
Cagra.0433s0003 10.0kb upstream 10.0kb upstream 6346 false Scaffold433: 1-6346 Capsella grandiflora
Cagra.0433s0003 10.0kb downstream 10.0kb downstream 11879 true Scaffold433: 6347-18225 Capsella grandiflora
Cagra.0433s0003 10.0kb downstream 10.0kb downstream 10000 false Scaffold433: 8226-18225 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122372484 5261 Brassicaceae View MSA
123840621 5264 Brassicales-Malvales View MSA
124346363 5266 SBM View MSA
124243646 5268 Malvidae View MSA
124050806 5270 Rosid View MSA
123751797 5271 Pentapetalae View MSA
122791749 5272 Eudicot View MSA
122042907 5273 Angiosperm View MSA
121348883 5274 Embryophyte View MSA
123381058 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain