Gene : Cagra.0434s0038 C. grandiflora v1.1
Defline:  (1 of 1) PTHR11946:SF76 - ATP BINDING/VALINE-TRNA LIGASE/AMINOACYL-TRNA LIGASE Genomic Order:  38
Name:  ? Cagra.0434s0038 Secondary Identifier:  ? PAC:28897412
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora TRNA-CHARGING-PWY Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0434s0038 0.5kb upstream 0.5kb upstream 8316 true Scaffold434: 130898-139213 Capsella grandiflora
Cagra.0434s0038 0.5kb upstream 0.5kb upstream 500 false Scaffold434: 130898-131397 Capsella grandiflora
Cagra.0434s0038 0.5kb downstream 0.5kb downstream 8316 true Scaffold434: 131398-139713 Capsella grandiflora
Cagra.0434s0038 0.5kb downstream 0.5kb downstream 500 false Scaffold434: 139214-139713 Capsella grandiflora
Cagra.0434s0038 1.0kb upstream 1.0kb upstream 8816 true Scaffold434: 130398-139213 Capsella grandiflora
Cagra.0434s0038 1.0kb upstream 1.0kb upstream 1000 false Scaffold434: 130398-131397 Capsella grandiflora
Cagra.0434s0038 1.0kb downstream 1.0kb downstream 8816 true Scaffold434: 131398-140213 Capsella grandiflora
Cagra.0434s0038 1.0kb downstream 1.0kb downstream 1000 false Scaffold434: 139214-140213 Capsella grandiflora
Cagra.0434s0038 2.0kb upstream 2.0kb upstream 9816 true Scaffold434: 129398-139213 Capsella grandiflora
Cagra.0434s0038 2.0kb upstream 2.0kb upstream 2000 false Scaffold434: 129398-131397 Capsella grandiflora
Cagra.0434s0038 2.0kb downstream 2.0kb downstream 9816 true Scaffold434: 131398-141213 Capsella grandiflora
Cagra.0434s0038 2.0kb downstream 2.0kb downstream 2000 false Scaffold434: 139214-141213 Capsella grandiflora
Cagra.0434s0038 5.0kb upstream 5.0kb upstream 12816 true Scaffold434: 126398-139213 Capsella grandiflora
Cagra.0434s0038 5.0kb upstream 5.0kb upstream 5000 false Scaffold434: 126398-131397 Capsella grandiflora
Cagra.0434s0038 5.0kb downstream 5.0kb downstream 12816 true Scaffold434: 131398-144213 Capsella grandiflora
Cagra.0434s0038 5.0kb downstream 5.0kb downstream 5000 false Scaffold434: 139214-144213 Capsella grandiflora
Cagra.0434s0038 10.0kb upstream 10.0kb upstream 17816 true Scaffold434: 121398-139213 Capsella grandiflora
Cagra.0434s0038 10.0kb upstream 10.0kb upstream 10000 false Scaffold434: 121398-131397 Capsella grandiflora
Cagra.0434s0038 10.0kb downstream 10.0kb downstream 17816 true Scaffold434: 131398-149213 Capsella grandiflora
Cagra.0434s0038 10.0kb downstream 10.0kb downstream 10000 false Scaffold434: 139214-149213 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122366361 5261 Brassicaceae View MSA
123830485 5264 Brassicales-Malvales View MSA
124338668 5266 SBM View MSA
124243410 5268 Malvidae View MSA
124066992 5270 Rosid View MSA
123752070 5271 Pentapetalae View MSA
122788218 5272 Eudicot View MSA
122045228 5273 Angiosperm View MSA
121348805 5274 Embryophyte View MSA
123424302 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain