Gene : Cagra.0430s0015 C. grandiflora v1.1
Defline:  (1 of 1) PTHR22849//PTHR22849:SF24 - WDSAM1 PROTEIN Genomic Order:  15
Name:  ? Cagra.0430s0015 Secondary Identifier:  ? PAC:28917322
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-7511 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0430s0015 0.5kb upstream 0.5kb upstream 2232 true Scaffold430: 42866-45097 Capsella grandiflora
Cagra.0430s0015 0.5kb upstream 0.5kb upstream 500 false Scaffold430: 44598-45097 Capsella grandiflora
Cagra.0430s0015 0.5kb downstream 0.5kb downstream 2232 true Scaffold430: 42366-44597 Capsella grandiflora
Cagra.0430s0015 0.5kb downstream 0.5kb downstream 500 false Scaffold430: 42366-42865 Capsella grandiflora
Cagra.0430s0015 1.0kb upstream 1.0kb upstream 2732 true Scaffold430: 42866-45597 Capsella grandiflora
Cagra.0430s0015 1.0kb upstream 1.0kb upstream 1000 false Scaffold430: 44598-45597 Capsella grandiflora
Cagra.0430s0015 1.0kb downstream 1.0kb downstream 2732 true Scaffold430: 41866-44597 Capsella grandiflora
Cagra.0430s0015 1.0kb downstream 1.0kb downstream 1000 false Scaffold430: 41866-42865 Capsella grandiflora
Cagra.0430s0015 2.0kb upstream 2.0kb upstream 3732 true Scaffold430: 42866-46597 Capsella grandiflora
Cagra.0430s0015 2.0kb upstream 2.0kb upstream 2000 false Scaffold430: 44598-46597 Capsella grandiflora
Cagra.0430s0015 2.0kb downstream 2.0kb downstream 3732 true Scaffold430: 40866-44597 Capsella grandiflora
Cagra.0430s0015 2.0kb downstream 2.0kb downstream 2000 false Scaffold430: 40866-42865 Capsella grandiflora
Cagra.0430s0015 5.0kb upstream 5.0kb upstream 6732 true Scaffold430: 42866-49597 Capsella grandiflora
Cagra.0430s0015 5.0kb upstream 5.0kb upstream 5000 false Scaffold430: 44598-49597 Capsella grandiflora
Cagra.0430s0015 5.0kb downstream 5.0kb downstream 6732 true Scaffold430: 37866-44597 Capsella grandiflora
Cagra.0430s0015 5.0kb downstream 5.0kb downstream 5000 false Scaffold430: 37866-42865 Capsella grandiflora
Cagra.0430s0015 10.0kb upstream 10.0kb upstream 11732 true Scaffold430: 42866-54597 Capsella grandiflora
Cagra.0430s0015 10.0kb upstream 10.0kb upstream 10000 false Scaffold430: 44598-54597 Capsella grandiflora
Cagra.0430s0015 10.0kb downstream 10.0kb downstream 11732 true Scaffold430: 32866-44597 Capsella grandiflora
Cagra.0430s0015 10.0kb downstream 10.0kb downstream 10000 false Scaffold430: 32866-42865 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122364375 5261 Brassicaceae View MSA
123839654 5264 Brassicales-Malvales View MSA
124345948 5266 SBM View MSA
124251997 5268 Malvidae View MSA
124070283 5270 Rosid View MSA
123752134 5271 Pentapetalae View MSA
122795209 5272 Eudicot View MSA
122048631 5273 Angiosperm View MSA
121351063 5274 Embryophyte View MSA
123428864 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain