Gene : Cagra.0402s0078 C. grandiflora v1.1
Defline:  (1 of 1) 1.3.1.83 - Geranylgeranyl diphosphate reductase / Geranylgeranyl reductase Genomic Order:  78
Name:  ? Cagra.0402s0078 Secondary Identifier:  ? PAC:28907935
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-5063 Capsella grandiflora pathologic  
Cgrandiflora PWY-5064 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0402s0078 0.5kb upstream 0.5kb upstream 2322 true Scaffold402: 279155-281476 Capsella grandiflora
Cagra.0402s0078 0.5kb upstream 0.5kb upstream 500 false Scaffold402: 280977-281476 Capsella grandiflora
Cagra.0402s0078 0.5kb downstream 0.5kb downstream 2322 true Scaffold402: 278655-280976 Capsella grandiflora
Cagra.0402s0078 0.5kb downstream 0.5kb downstream 500 false Scaffold402: 278655-279154 Capsella grandiflora
Cagra.0402s0078 1.0kb upstream 1.0kb upstream 2822 true Scaffold402: 279155-281976 Capsella grandiflora
Cagra.0402s0078 1.0kb upstream 1.0kb upstream 1000 false Scaffold402: 280977-281976 Capsella grandiflora
Cagra.0402s0078 1.0kb downstream 1.0kb downstream 2822 true Scaffold402: 278155-280976 Capsella grandiflora
Cagra.0402s0078 1.0kb downstream 1.0kb downstream 1000 false Scaffold402: 278155-279154 Capsella grandiflora
Cagra.0402s0078 2.0kb upstream 2.0kb upstream 3822 true Scaffold402: 279155-282976 Capsella grandiflora
Cagra.0402s0078 2.0kb upstream 2.0kb upstream 2000 false Scaffold402: 280977-282976 Capsella grandiflora
Cagra.0402s0078 2.0kb downstream 2.0kb downstream 3822 true Scaffold402: 277155-280976 Capsella grandiflora
Cagra.0402s0078 2.0kb downstream 2.0kb downstream 2000 false Scaffold402: 277155-279154 Capsella grandiflora
Cagra.0402s0078 5.0kb upstream 5.0kb upstream 6822 true Scaffold402: 279155-285976 Capsella grandiflora
Cagra.0402s0078 5.0kb upstream 5.0kb upstream 5000 false Scaffold402: 280977-285976 Capsella grandiflora
Cagra.0402s0078 5.0kb downstream 5.0kb downstream 6822 true Scaffold402: 274155-280976 Capsella grandiflora
Cagra.0402s0078 5.0kb downstream 5.0kb downstream 5000 false Scaffold402: 274155-279154 Capsella grandiflora
Cagra.0402s0078 10.0kb upstream 10.0kb upstream 11822 true Scaffold402: 279155-290976 Capsella grandiflora
Cagra.0402s0078 10.0kb upstream 10.0kb upstream 10000 false Scaffold402: 280977-290976 Capsella grandiflora
Cagra.0402s0078 10.0kb downstream 10.0kb downstream 11822 true Scaffold402: 269155-280976 Capsella grandiflora
Cagra.0402s0078 10.0kb downstream 10.0kb downstream 10000 false Scaffold402: 269155-279154 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122368864 5261 Brassicaceae View MSA
123831426 5264 Brassicales-Malvales View MSA
124345987 5266 SBM View MSA
124242880 5268 Malvidae View MSA
124070478 5270 Rosid View MSA
123742493 5271 Pentapetalae View MSA
122794040 5272 Eudicot View MSA
122041542 5273 Angiosperm View MSA
121345615 5274 Embryophyte View MSA
123424772 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain