Gene : Cagra.0406s0002 C. grandiflora v1.1
Defline:  (1 of 2) PTHR11618:SF4 - TRANSCRIPTION FACTOR IIIB 90 KDA SUBUNIT Genomic Order:  2
Name:  ? Cagra.0406s0002 Secondary Identifier:  ? PAC:28904856
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0406s0002 0.5kb upstream 0.5kb upstream 5224 true Scaffold406: 5315-10538 Capsella grandiflora
Cagra.0406s0002 0.5kb upstream 0.5kb upstream 500 false Scaffold406: 5315-5814 Capsella grandiflora
Cagra.0406s0002 0.5kb downstream 0.5kb downstream 5224 true Scaffold406: 5815-11038 Capsella grandiflora
Cagra.0406s0002 0.5kb downstream 0.5kb downstream 500 false Scaffold406: 10539-11038 Capsella grandiflora
Cagra.0406s0002 1.0kb upstream 1.0kb upstream 5724 true Scaffold406: 4815-10538 Capsella grandiflora
Cagra.0406s0002 1.0kb upstream 1.0kb upstream 1000 false Scaffold406: 4815-5814 Capsella grandiflora
Cagra.0406s0002 1.0kb downstream 1.0kb downstream 5724 true Scaffold406: 5815-11538 Capsella grandiflora
Cagra.0406s0002 1.0kb downstream 1.0kb downstream 1000 false Scaffold406: 10539-11538 Capsella grandiflora
Cagra.0406s0002 2.0kb upstream 2.0kb upstream 6724 true Scaffold406: 3815-10538 Capsella grandiflora
Cagra.0406s0002 2.0kb upstream 2.0kb upstream 2000 false Scaffold406: 3815-5814 Capsella grandiflora
Cagra.0406s0002 2.0kb downstream 2.0kb downstream 6724 true Scaffold406: 5815-12538 Capsella grandiflora
Cagra.0406s0002 2.0kb downstream 2.0kb downstream 2000 false Scaffold406: 10539-12538 Capsella grandiflora
Cagra.0406s0002 5.0kb upstream 5.0kb upstream 9724 true Scaffold406: 815-10538 Capsella grandiflora
Cagra.0406s0002 5.0kb upstream 5.0kb upstream 5000 false Scaffold406: 815-5814 Capsella grandiflora
Cagra.0406s0002 5.0kb downstream 5.0kb downstream 9724 true Scaffold406: 5815-15538 Capsella grandiflora
Cagra.0406s0002 5.0kb downstream 5.0kb downstream 5000 false Scaffold406: 10539-15538 Capsella grandiflora
Cagra.0406s0002 10.0kb upstream 10.0kb upstream 10538 true Scaffold406: 1-10538 Capsella grandiflora
Cagra.0406s0002 10.0kb upstream 10.0kb upstream 5814 false Scaffold406: 1-5814 Capsella grandiflora
Cagra.0406s0002 10.0kb downstream 10.0kb downstream 14724 true Scaffold406: 5815-20538 Capsella grandiflora
Cagra.0406s0002 10.0kb downstream 10.0kb downstream 10000 false Scaffold406: 10539-20538 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122377742 5261 Brassicaceae View MSA
123801620 5264 Brassicales-Malvales View MSA
124298899 5266 SBM View MSA
124150438 5268 Malvidae View MSA
123876048 5270 Rosid View MSA
123746124 5271 Pentapetalae View MSA
122796668 5272 Eudicot View MSA
122049145 5273 Angiosperm View MSA
121351360 5274 Embryophyte View MSA
123427604 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain