Gene : Cagra.0406s0005 C. grandiflora v1.1
Defline:  (1 of 1) PF08378 - Nuclease-related domain (NERD) Genomic Order:  5
Name:  ? Cagra.0406s0005 Secondary Identifier:  ? PAC:28904860
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0406s0005 0.5kb upstream 0.5kb upstream 2560 true Scaffold406: 15715-18274 Capsella grandiflora
Cagra.0406s0005 0.5kb upstream 0.5kb upstream 500 false Scaffold406: 15715-16214 Capsella grandiflora
Cagra.0406s0005 0.5kb downstream 0.5kb downstream 2560 true Scaffold406: 16215-18774 Capsella grandiflora
Cagra.0406s0005 0.5kb downstream 0.5kb downstream 500 false Scaffold406: 18275-18774 Capsella grandiflora
Cagra.0406s0005 1.0kb upstream 1.0kb upstream 3060 true Scaffold406: 15215-18274 Capsella grandiflora
Cagra.0406s0005 1.0kb upstream 1.0kb upstream 1000 false Scaffold406: 15215-16214 Capsella grandiflora
Cagra.0406s0005 1.0kb downstream 1.0kb downstream 3060 true Scaffold406: 16215-19274 Capsella grandiflora
Cagra.0406s0005 1.0kb downstream 1.0kb downstream 1000 false Scaffold406: 18275-19274 Capsella grandiflora
Cagra.0406s0005 2.0kb upstream 2.0kb upstream 4060 true Scaffold406: 14215-18274 Capsella grandiflora
Cagra.0406s0005 2.0kb upstream 2.0kb upstream 2000 false Scaffold406: 14215-16214 Capsella grandiflora
Cagra.0406s0005 2.0kb downstream 2.0kb downstream 4060 true Scaffold406: 16215-20274 Capsella grandiflora
Cagra.0406s0005 2.0kb downstream 2.0kb downstream 2000 false Scaffold406: 18275-20274 Capsella grandiflora
Cagra.0406s0005 5.0kb upstream 5.0kb upstream 7060 true Scaffold406: 11215-18274 Capsella grandiflora
Cagra.0406s0005 5.0kb upstream 5.0kb upstream 5000 false Scaffold406: 11215-16214 Capsella grandiflora
Cagra.0406s0005 5.0kb downstream 5.0kb downstream 7060 true Scaffold406: 16215-23274 Capsella grandiflora
Cagra.0406s0005 5.0kb downstream 5.0kb downstream 5000 false Scaffold406: 18275-23274 Capsella grandiflora
Cagra.0406s0005 10.0kb upstream 10.0kb upstream 12060 true Scaffold406: 6215-18274 Capsella grandiflora
Cagra.0406s0005 10.0kb upstream 10.0kb upstream 10000 false Scaffold406: 6215-16214 Capsella grandiflora
Cagra.0406s0005 10.0kb downstream 10.0kb downstream 12060 true Scaffold406: 16215-28274 Capsella grandiflora
Cagra.0406s0005 10.0kb downstream 10.0kb downstream 10000 false Scaffold406: 18275-28274 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041014 5273 Angiosperm View MSA
122375260 5261 Brassicaceae View MSA
123836444 5264 Brassicales-Malvales View MSA
124340077 5266 SBM View MSA
124244348 5268 Malvidae View MSA
124065575 5270 Rosid View MSA
123737845 5271 Pentapetalae View MSA
122786817 5272 Eudicot View MSA
121347889 5274 Embryophyte View MSA
123380667 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain