Gene : Cagra.0380s0007 C. grandiflora v1.1
Defline:  (1 of 4) 6.1.1.12 - Aspartate--tRNA ligase / Aspartyl-tRNA synthetase Genomic Order:  7
Name:  ? Cagra.0380s0007 Secondary Identifier:  ? PAC:28902124
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora TRNA-CHARGING-PWY Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0380s0007 0.5kb upstream 0.5kb upstream 3379 true Scaffold380: 23039-26417 Capsella grandiflora
Cagra.0380s0007 0.5kb upstream 0.5kb upstream 500 false Scaffold380: 25918-26417 Capsella grandiflora
Cagra.0380s0007 0.5kb downstream 0.5kb downstream 3379 true Scaffold380: 22539-25917 Capsella grandiflora
Cagra.0380s0007 0.5kb downstream 0.5kb downstream 500 false Scaffold380: 22539-23038 Capsella grandiflora
Cagra.0380s0007 1.0kb upstream 1.0kb upstream 3879 true Scaffold380: 23039-26917 Capsella grandiflora
Cagra.0380s0007 1.0kb upstream 1.0kb upstream 1000 false Scaffold380: 25918-26917 Capsella grandiflora
Cagra.0380s0007 1.0kb downstream 1.0kb downstream 3879 true Scaffold380: 22039-25917 Capsella grandiflora
Cagra.0380s0007 1.0kb downstream 1.0kb downstream 1000 false Scaffold380: 22039-23038 Capsella grandiflora
Cagra.0380s0007 2.0kb upstream 2.0kb upstream 4879 true Scaffold380: 23039-27917 Capsella grandiflora
Cagra.0380s0007 2.0kb upstream 2.0kb upstream 2000 false Scaffold380: 25918-27917 Capsella grandiflora
Cagra.0380s0007 2.0kb downstream 2.0kb downstream 4879 true Scaffold380: 21039-25917 Capsella grandiflora
Cagra.0380s0007 2.0kb downstream 2.0kb downstream 2000 false Scaffold380: 21039-23038 Capsella grandiflora
Cagra.0380s0007 5.0kb upstream 5.0kb upstream 7879 true Scaffold380: 23039-30917 Capsella grandiflora
Cagra.0380s0007 5.0kb upstream 5.0kb upstream 5000 false Scaffold380: 25918-30917 Capsella grandiflora
Cagra.0380s0007 5.0kb downstream 5.0kb downstream 7879 true Scaffold380: 18039-25917 Capsella grandiflora
Cagra.0380s0007 5.0kb downstream 5.0kb downstream 5000 false Scaffold380: 18039-23038 Capsella grandiflora
Cagra.0380s0007 10.0kb upstream 10.0kb upstream 12879 true Scaffold380: 23039-35917 Capsella grandiflora
Cagra.0380s0007 10.0kb upstream 10.0kb upstream 10000 false Scaffold380: 25918-35917 Capsella grandiflora
Cagra.0380s0007 10.0kb downstream 10.0kb downstream 12879 true Scaffold380: 13039-25917 Capsella grandiflora
Cagra.0380s0007 10.0kb downstream 10.0kb downstream 10000 false Scaffold380: 13039-23038 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122373469 5261 Brassicaceae View MSA
123830124 5264 Brassicales-Malvales View MSA
124340774 5266 SBM View MSA
124240572 5268 Malvidae View MSA
124066804 5270 Rosid View MSA
123746132 5271 Pentapetalae View MSA
122792438 5272 Eudicot View MSA
122047949 5273 Angiosperm View MSA
121349506 5274 Embryophyte View MSA
123428007 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain