Gene : Cagra.0342s0009 C. grandiflora v1.1
Defline:  (1 of 2) PTHR10896:SF17 - BETA-1,4-XYLOSYLTRANSFERASE IRX14-RELATED Genomic Order:  9
Name:  ? Cagra.0342s0009 Secondary Identifier:  ? PAC:28909917
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-5800 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0342s0009 0.5kb upstream 0.5kb upstream 2818 true Scaffold342: 28358-31175 Capsella grandiflora
Cagra.0342s0009 0.5kb upstream 0.5kb upstream 500 false Scaffold342: 28358-28857 Capsella grandiflora
Cagra.0342s0009 0.5kb downstream 0.5kb downstream 2818 true Scaffold342: 28858-31675 Capsella grandiflora
Cagra.0342s0009 0.5kb downstream 0.5kb downstream 500 false Scaffold342: 31176-31675 Capsella grandiflora
Cagra.0342s0009 1.0kb upstream 1.0kb upstream 3318 true Scaffold342: 27858-31175 Capsella grandiflora
Cagra.0342s0009 1.0kb upstream 1.0kb upstream 1000 false Scaffold342: 27858-28857 Capsella grandiflora
Cagra.0342s0009 1.0kb downstream 1.0kb downstream 3318 true Scaffold342: 28858-32175 Capsella grandiflora
Cagra.0342s0009 1.0kb downstream 1.0kb downstream 1000 false Scaffold342: 31176-32175 Capsella grandiflora
Cagra.0342s0009 2.0kb upstream 2.0kb upstream 4318 true Scaffold342: 26858-31175 Capsella grandiflora
Cagra.0342s0009 2.0kb upstream 2.0kb upstream 2000 false Scaffold342: 26858-28857 Capsella grandiflora
Cagra.0342s0009 2.0kb downstream 2.0kb downstream 4318 true Scaffold342: 28858-33175 Capsella grandiflora
Cagra.0342s0009 2.0kb downstream 2.0kb downstream 2000 false Scaffold342: 31176-33175 Capsella grandiflora
Cagra.0342s0009 5.0kb upstream 5.0kb upstream 7318 true Scaffold342: 23858-31175 Capsella grandiflora
Cagra.0342s0009 5.0kb upstream 5.0kb upstream 5000 false Scaffold342: 23858-28857 Capsella grandiflora
Cagra.0342s0009 5.0kb downstream 5.0kb downstream 7318 true Scaffold342: 28858-36175 Capsella grandiflora
Cagra.0342s0009 5.0kb downstream 5.0kb downstream 5000 false Scaffold342: 31176-36175 Capsella grandiflora
Cagra.0342s0009 10.0kb upstream 10.0kb upstream 12318 true Scaffold342: 18858-31175 Capsella grandiflora
Cagra.0342s0009 10.0kb upstream 10.0kb upstream 10000 false Scaffold342: 18858-28857 Capsella grandiflora
Cagra.0342s0009 10.0kb downstream 10.0kb downstream 12318 true Scaffold342: 28858-41175 Capsella grandiflora
Cagra.0342s0009 10.0kb downstream 10.0kb downstream 10000 false Scaffold342: 31176-41175 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041384 5273 Angiosperm View MSA
122366648 5261 Brassicaceae View MSA
123840009 5264 Brassicales-Malvales View MSA
124337936 5266 SBM View MSA
124241535 5268 Malvidae View MSA
124066029 5270 Rosid View MSA
123737943 5271 Pentapetalae View MSA
122790258 5272 Eudicot View MSA
121350855 5274 Embryophyte View MSA
123381907 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain