Gene : Cagra.0342s0047 C. grandiflora v1.1
Defline:  (1 of 1) PTHR12219 - NADH-UBIQUINONE OXIDOREDUCTASE Genomic Order:  47
Name:  ? Cagra.0342s0047 Secondary Identifier:  ? PAC:28909888
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-3781 Capsella grandiflora pathologic  
Cgrandiflora PWY-4302 Capsella grandiflora pathologic  
Cgrandiflora PWY-5083 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0342s0047 0.5kb upstream 0.5kb upstream 2103 true Scaffold342: 166202-168304 Capsella grandiflora
Cagra.0342s0047 0.5kb upstream 0.5kb upstream 500 false Scaffold342: 166202-166701 Capsella grandiflora
Cagra.0342s0047 0.5kb downstream 0.5kb downstream 2103 true Scaffold342: 166702-168804 Capsella grandiflora
Cagra.0342s0047 0.5kb downstream 0.5kb downstream 500 false Scaffold342: 168305-168804 Capsella grandiflora
Cagra.0342s0047 1.0kb upstream 1.0kb upstream 2603 true Scaffold342: 165702-168304 Capsella grandiflora
Cagra.0342s0047 1.0kb upstream 1.0kb upstream 1000 false Scaffold342: 165702-166701 Capsella grandiflora
Cagra.0342s0047 1.0kb downstream 1.0kb downstream 2603 true Scaffold342: 166702-169304 Capsella grandiflora
Cagra.0342s0047 1.0kb downstream 1.0kb downstream 1000 false Scaffold342: 168305-169304 Capsella grandiflora
Cagra.0342s0047 2.0kb upstream 2.0kb upstream 3603 true Scaffold342: 164702-168304 Capsella grandiflora
Cagra.0342s0047 2.0kb upstream 2.0kb upstream 2000 false Scaffold342: 164702-166701 Capsella grandiflora
Cagra.0342s0047 2.0kb downstream 2.0kb downstream 3603 true Scaffold342: 166702-170304 Capsella grandiflora
Cagra.0342s0047 2.0kb downstream 2.0kb downstream 2000 false Scaffold342: 168305-170304 Capsella grandiflora
Cagra.0342s0047 5.0kb upstream 5.0kb upstream 6603 true Scaffold342: 161702-168304 Capsella grandiflora
Cagra.0342s0047 5.0kb upstream 5.0kb upstream 5000 false Scaffold342: 161702-166701 Capsella grandiflora
Cagra.0342s0047 5.0kb downstream 5.0kb downstream 6603 true Scaffold342: 166702-173304 Capsella grandiflora
Cagra.0342s0047 5.0kb downstream 5.0kb downstream 5000 false Scaffold342: 168305-173304 Capsella grandiflora
Cagra.0342s0047 10.0kb upstream 10.0kb upstream 11603 true Scaffold342: 156702-168304 Capsella grandiflora
Cagra.0342s0047 10.0kb upstream 10.0kb upstream 10000 false Scaffold342: 156702-166701 Capsella grandiflora
Cagra.0342s0047 10.0kb downstream 10.0kb downstream 11603 true Scaffold342: 166702-178304 Capsella grandiflora
Cagra.0342s0047 10.0kb downstream 10.0kb downstream 10000 false Scaffold342: 168305-178304 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122376854 5261 Brassicaceae View MSA
123832720 5264 Brassicales-Malvales View MSA
124343584 5266 SBM View MSA
124248508 5268 Malvidae View MSA
124063322 5270 Rosid View MSA
123738055 5271 Pentapetalae View MSA
122794189 5272 Eudicot View MSA
122045694 5273 Angiosperm View MSA
121345642 5274 Embryophyte View MSA
123424556 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain