Gene : Cagra.0334s0028 C. grandiflora v1.1
Defline:  (1 of 2) PTHR31375:SF43 - GLYCOSIDE HYDROLASE FAMILY 28 PROTEIN / POLYGALACTURONASE (PECTINASE) FAMILY PROTEIN Genomic Order:  28
Name:  ? Cagra.0334s0028 Secondary Identifier:  ? PAC:28906507
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-1081 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0334s0028 0.5kb upstream 0.5kb upstream 2478 true Scaffold334: 124995-127472 Capsella grandiflora
Cagra.0334s0028 0.5kb upstream 0.5kb upstream 500 false Scaffold334: 124995-125494 Capsella grandiflora
Cagra.0334s0028 0.5kb downstream 0.5kb downstream 2478 true Scaffold334: 125495-127972 Capsella grandiflora
Cagra.0334s0028 0.5kb downstream 0.5kb downstream 500 false Scaffold334: 127473-127972 Capsella grandiflora
Cagra.0334s0028 1.0kb upstream 1.0kb upstream 2978 true Scaffold334: 124495-127472 Capsella grandiflora
Cagra.0334s0028 1.0kb upstream 1.0kb upstream 1000 false Scaffold334: 124495-125494 Capsella grandiflora
Cagra.0334s0028 1.0kb downstream 1.0kb downstream 2978 true Scaffold334: 125495-128472 Capsella grandiflora
Cagra.0334s0028 1.0kb downstream 1.0kb downstream 1000 false Scaffold334: 127473-128472 Capsella grandiflora
Cagra.0334s0028 2.0kb upstream 2.0kb upstream 3978 true Scaffold334: 123495-127472 Capsella grandiflora
Cagra.0334s0028 2.0kb upstream 2.0kb upstream 2000 false Scaffold334: 123495-125494 Capsella grandiflora
Cagra.0334s0028 2.0kb downstream 2.0kb downstream 3978 true Scaffold334: 125495-129472 Capsella grandiflora
Cagra.0334s0028 2.0kb downstream 2.0kb downstream 2000 false Scaffold334: 127473-129472 Capsella grandiflora
Cagra.0334s0028 5.0kb upstream 5.0kb upstream 6978 true Scaffold334: 120495-127472 Capsella grandiflora
Cagra.0334s0028 5.0kb upstream 5.0kb upstream 5000 false Scaffold334: 120495-125494 Capsella grandiflora
Cagra.0334s0028 5.0kb downstream 5.0kb downstream 6978 true Scaffold334: 125495-132472 Capsella grandiflora
Cagra.0334s0028 5.0kb downstream 5.0kb downstream 5000 false Scaffold334: 127473-132472 Capsella grandiflora
Cagra.0334s0028 10.0kb upstream 10.0kb upstream 11978 true Scaffold334: 115495-127472 Capsella grandiflora
Cagra.0334s0028 10.0kb upstream 10.0kb upstream 10000 false Scaffold334: 115495-125494 Capsella grandiflora
Cagra.0334s0028 10.0kb downstream 10.0kb downstream 11978 true Scaffold334: 125495-137472 Capsella grandiflora
Cagra.0334s0028 10.0kb downstream 10.0kb downstream 10000 false Scaffold334: 127473-137472 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122376062 5261 Brassicaceae View MSA
123841630 5264 Brassicales-Malvales View MSA
124345370 5266 SBM View MSA
124249445 5268 Malvidae View MSA
124066514 5270 Rosid View MSA
123746353 5271 Pentapetalae View MSA
122791695 5272 Eudicot View MSA
122048646 5273 Angiosperm View MSA
121350352 5274 Embryophyte View MSA
123381691 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain