Gene : Cagra.0338s0008 C. grandiflora v1.1
Defline:  (1 of 1) PTHR12565:SF108 - TRANSCRIPTION FACTOR PIF1 Genomic Order:  8
Name:  ? Cagra.0338s0008 Secondary Identifier:  ? PAC:28902979
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0338s0008 0.5kb upstream 0.5kb upstream 3044 true Scaffold338: 38528-41571 Capsella grandiflora
Cagra.0338s0008 0.5kb upstream 0.5kb upstream 500 false Scaffold338: 41072-41571 Capsella grandiflora
Cagra.0338s0008 0.5kb downstream 0.5kb downstream 3044 true Scaffold338: 38028-41071 Capsella grandiflora
Cagra.0338s0008 0.5kb downstream 0.5kb downstream 500 false Scaffold338: 38028-38527 Capsella grandiflora
Cagra.0338s0008 1.0kb upstream 1.0kb upstream 3544 true Scaffold338: 38528-42071 Capsella grandiflora
Cagra.0338s0008 1.0kb upstream 1.0kb upstream 1000 false Scaffold338: 41072-42071 Capsella grandiflora
Cagra.0338s0008 1.0kb downstream 1.0kb downstream 3544 true Scaffold338: 37528-41071 Capsella grandiflora
Cagra.0338s0008 1.0kb downstream 1.0kb downstream 1000 false Scaffold338: 37528-38527 Capsella grandiflora
Cagra.0338s0008 2.0kb upstream 2.0kb upstream 4544 true Scaffold338: 38528-43071 Capsella grandiflora
Cagra.0338s0008 2.0kb upstream 2.0kb upstream 2000 false Scaffold338: 41072-43071 Capsella grandiflora
Cagra.0338s0008 2.0kb downstream 2.0kb downstream 4544 true Scaffold338: 36528-41071 Capsella grandiflora
Cagra.0338s0008 2.0kb downstream 2.0kb downstream 2000 false Scaffold338: 36528-38527 Capsella grandiflora
Cagra.0338s0008 5.0kb upstream 5.0kb upstream 7544 true Scaffold338: 38528-46071 Capsella grandiflora
Cagra.0338s0008 5.0kb upstream 5.0kb upstream 5000 false Scaffold338: 41072-46071 Capsella grandiflora
Cagra.0338s0008 5.0kb downstream 5.0kb downstream 7544 true Scaffold338: 33528-41071 Capsella grandiflora
Cagra.0338s0008 5.0kb downstream 5.0kb downstream 5000 false Scaffold338: 33528-38527 Capsella grandiflora
Cagra.0338s0008 10.0kb upstream 10.0kb upstream 12544 true Scaffold338: 38528-51071 Capsella grandiflora
Cagra.0338s0008 10.0kb upstream 10.0kb upstream 10000 false Scaffold338: 41072-51071 Capsella grandiflora
Cagra.0338s0008 10.0kb downstream 10.0kb downstream 12544 true Scaffold338: 28528-41071 Capsella grandiflora
Cagra.0338s0008 10.0kb downstream 10.0kb downstream 10000 false Scaffold338: 28528-38527 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122360353 5261 Brassicaceae View MSA
123841496 5264 Brassicales-Malvales View MSA
124350484 5266 SBM View MSA
124252658 5268 Malvidae View MSA
124069526 5270 Rosid View MSA
123737897 5271 Pentapetalae View MSA
122794460 5272 Eudicot View MSA
122048181 5273 Angiosperm View MSA
121348763 5274 Embryophyte View MSA
123428440 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain