Gene : Cagra.0568s0148 C. grandiflora v1.1
Defline:  (1 of 2) PTHR28580:SF1 - GENERAL TRANSCRIPTION FACTOR IIH SUBUNIT 5 Genomic Order:  148
Name:  ? Cagra.0568s0148 Secondary Identifier:  ? PAC:28910859
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0568s0148 0.5kb upstream 0.5kb upstream 1475 true Scaffold568: 509562-511036 Capsella grandiflora
Cagra.0568s0148 0.5kb upstream 0.5kb upstream 500 false Scaffold568: 509562-510061 Capsella grandiflora
Cagra.0568s0148 0.5kb downstream 0.5kb downstream 1475 true Scaffold568: 510062-511536 Capsella grandiflora
Cagra.0568s0148 0.5kb downstream 0.5kb downstream 500 false Scaffold568: 511037-511536 Capsella grandiflora
Cagra.0568s0148 1.0kb upstream 1.0kb upstream 1975 true Scaffold568: 509062-511036 Capsella grandiflora
Cagra.0568s0148 1.0kb upstream 1.0kb upstream 1000 false Scaffold568: 509062-510061 Capsella grandiflora
Cagra.0568s0148 1.0kb downstream 1.0kb downstream 1975 true Scaffold568: 510062-512036 Capsella grandiflora
Cagra.0568s0148 1.0kb downstream 1.0kb downstream 1000 false Scaffold568: 511037-512036 Capsella grandiflora
Cagra.0568s0148 2.0kb upstream 2.0kb upstream 2975 true Scaffold568: 508062-511036 Capsella grandiflora
Cagra.0568s0148 2.0kb upstream 2.0kb upstream 2000 false Scaffold568: 508062-510061 Capsella grandiflora
Cagra.0568s0148 2.0kb downstream 2.0kb downstream 2975 true Scaffold568: 510062-513036 Capsella grandiflora
Cagra.0568s0148 2.0kb downstream 2.0kb downstream 2000 false Scaffold568: 511037-513036 Capsella grandiflora
Cagra.0568s0148 5.0kb upstream 5.0kb upstream 5975 true Scaffold568: 505062-511036 Capsella grandiflora
Cagra.0568s0148 5.0kb upstream 5.0kb upstream 5000 false Scaffold568: 505062-510061 Capsella grandiflora
Cagra.0568s0148 5.0kb downstream 5.0kb downstream 5975 true Scaffold568: 510062-516036 Capsella grandiflora
Cagra.0568s0148 5.0kb downstream 5.0kb downstream 5000 false Scaffold568: 511037-516036 Capsella grandiflora
Cagra.0568s0148 10.0kb upstream 10.0kb upstream 10975 true Scaffold568: 500062-511036 Capsella grandiflora
Cagra.0568s0148 10.0kb upstream 10.0kb upstream 10000 false Scaffold568: 500062-510061 Capsella grandiflora
Cagra.0568s0148 10.0kb downstream 10.0kb downstream 10975 true Scaffold568: 510062-521036 Capsella grandiflora
Cagra.0568s0148 10.0kb downstream 10.0kb downstream 10000 false Scaffold568: 511037-521036 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122028494 5273 Angiosperm View MSA
122374875 5261 Brassicaceae View MSA
123831220 5264 Brassicales-Malvales View MSA
124321719 5266 SBM View MSA
124237192 5268 Malvidae View MSA
124064736 5270 Rosid View MSA
123736521 5271 Pentapetalae View MSA
122785629 5272 Eudicot View MSA
121345016 5274 Embryophyte View MSA
123425151 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain