Gene : Cagra.0568s0159 C. grandiflora v1.1
Defline:  (1 of 3) PTHR11751:SF411 - AMINOTRANSFERASE ACS10-RELATED Genomic Order:  159
Name:  ? Cagra.0568s0159 Secondary Identifier:  ? PAC:28911061
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Sequence Feature Displayer

Ontology Annotation Displayer

6 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora ASPARTATE-DEG1-PWY Capsella grandiflora pathologic  
Cgrandiflora ASPARTATESYN-PWY Capsella grandiflora pathologic  
Cgrandiflora PWY-3001 Capsella grandiflora pathologic  
Cgrandiflora PWY-7115 Capsella grandiflora pathologic  
Cgrandiflora PWY-7117 Capsella grandiflora pathologic  
Cgrandiflora THRESYN-PWY Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0568s0159 0.5kb upstream 0.5kb upstream 2677 true Scaffold568: 549692-552368 Capsella grandiflora
Cagra.0568s0159 0.5kb upstream 0.5kb upstream 500 false Scaffold568: 551869-552368 Capsella grandiflora
Cagra.0568s0159 0.5kb downstream 0.5kb downstream 2677 true Scaffold568: 549192-551868 Capsella grandiflora
Cagra.0568s0159 0.5kb downstream 0.5kb downstream 500 false Scaffold568: 549192-549691 Capsella grandiflora
Cagra.0568s0159 1.0kb upstream 1.0kb upstream 3177 true Scaffold568: 549692-552868 Capsella grandiflora
Cagra.0568s0159 1.0kb upstream 1.0kb upstream 1000 false Scaffold568: 551869-552868 Capsella grandiflora
Cagra.0568s0159 1.0kb downstream 1.0kb downstream 3177 true Scaffold568: 548692-551868 Capsella grandiflora
Cagra.0568s0159 1.0kb downstream 1.0kb downstream 1000 false Scaffold568: 548692-549691 Capsella grandiflora
Cagra.0568s0159 2.0kb upstream 2.0kb upstream 4177 true Scaffold568: 549692-553868 Capsella grandiflora
Cagra.0568s0159 2.0kb upstream 2.0kb upstream 2000 false Scaffold568: 551869-553868 Capsella grandiflora
Cagra.0568s0159 2.0kb downstream 2.0kb downstream 4177 true Scaffold568: 547692-551868 Capsella grandiflora
Cagra.0568s0159 2.0kb downstream 2.0kb downstream 2000 false Scaffold568: 547692-549691 Capsella grandiflora
Cagra.0568s0159 5.0kb upstream 5.0kb upstream 7177 true Scaffold568: 549692-556868 Capsella grandiflora
Cagra.0568s0159 5.0kb upstream 5.0kb upstream 5000 false Scaffold568: 551869-556868 Capsella grandiflora
Cagra.0568s0159 5.0kb downstream 5.0kb downstream 7177 true Scaffold568: 544692-551868 Capsella grandiflora
Cagra.0568s0159 5.0kb downstream 5.0kb downstream 5000 false Scaffold568: 544692-549691 Capsella grandiflora
Cagra.0568s0159 10.0kb upstream 10.0kb upstream 12177 true Scaffold568: 549692-561868 Capsella grandiflora
Cagra.0568s0159 10.0kb upstream 10.0kb upstream 10000 false Scaffold568: 551869-561868 Capsella grandiflora
Cagra.0568s0159 10.0kb downstream 10.0kb downstream 12177 true Scaffold568: 539692-551868 Capsella grandiflora
Cagra.0568s0159 10.0kb downstream 10.0kb downstream 10000 false Scaffold568: 539692-549691 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122343087 5261 Brassicaceae View MSA
123783388 5264 Brassicales-Malvales View MSA
124281623 5266 SBM View MSA
124136347 5268 Malvidae View MSA
124060973 5270 Rosid View MSA
123749397 5271 Pentapetalae View MSA
122792167 5272 Eudicot View MSA
122042730 5273 Angiosperm View MSA
121351183 5274 Embryophyte View MSA
123428176 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain