Gene : Cagra.0563s0005 C. grandiflora v1.1
Defline:  (1 of 1) PTHR10953//PTHR10953:SF135 - UBIQUITIN-ACTIVATING ENZYME E1 Genomic Order:  5
Name:  ? Cagra.0563s0005 Secondary Identifier:  ? PAC:28917946
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-6823 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0563s0005 0.5kb upstream 0.5kb upstream 6437 true Scaffold563: 28373-34809 Capsella grandiflora
Cagra.0563s0005 0.5kb upstream 0.5kb upstream 500 false Scaffold563: 28373-28872 Capsella grandiflora
Cagra.0563s0005 0.5kb downstream 0.5kb downstream 6437 true Scaffold563: 28873-35309 Capsella grandiflora
Cagra.0563s0005 0.5kb downstream 0.5kb downstream 500 false Scaffold563: 34810-35309 Capsella grandiflora
Cagra.0563s0005 1.0kb upstream 1.0kb upstream 6937 true Scaffold563: 27873-34809 Capsella grandiflora
Cagra.0563s0005 1.0kb upstream 1.0kb upstream 1000 false Scaffold563: 27873-28872 Capsella grandiflora
Cagra.0563s0005 1.0kb downstream 1.0kb downstream 6937 true Scaffold563: 28873-35809 Capsella grandiflora
Cagra.0563s0005 1.0kb downstream 1.0kb downstream 1000 false Scaffold563: 34810-35809 Capsella grandiflora
Cagra.0563s0005 2.0kb upstream 2.0kb upstream 7937 true Scaffold563: 26873-34809 Capsella grandiflora
Cagra.0563s0005 2.0kb upstream 2.0kb upstream 2000 false Scaffold563: 26873-28872 Capsella grandiflora
Cagra.0563s0005 2.0kb downstream 2.0kb downstream 7937 true Scaffold563: 28873-36809 Capsella grandiflora
Cagra.0563s0005 2.0kb downstream 2.0kb downstream 2000 false Scaffold563: 34810-36809 Capsella grandiflora
Cagra.0563s0005 5.0kb upstream 5.0kb upstream 10937 true Scaffold563: 23873-34809 Capsella grandiflora
Cagra.0563s0005 5.0kb upstream 5.0kb upstream 5000 false Scaffold563: 23873-28872 Capsella grandiflora
Cagra.0563s0005 5.0kb downstream 5.0kb downstream 10937 true Scaffold563: 28873-39809 Capsella grandiflora
Cagra.0563s0005 5.0kb downstream 5.0kb downstream 5000 false Scaffold563: 34810-39809 Capsella grandiflora
Cagra.0563s0005 10.0kb upstream 10.0kb upstream 15937 true Scaffold563: 18873-34809 Capsella grandiflora
Cagra.0563s0005 10.0kb upstream 10.0kb upstream 10000 false Scaffold563: 18873-28872 Capsella grandiflora
Cagra.0563s0005 10.0kb downstream 10.0kb downstream 11317 true Scaffold563: 28873-40189 Capsella grandiflora
Cagra.0563s0005 10.0kb downstream 10.0kb downstream 5380 false Scaffold563: 34810-40189 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122368013 5261 Brassicaceae View MSA
123838513 5264 Brassicales-Malvales View MSA
124337795 5266 SBM View MSA
124237506 5268 Malvidae View MSA
124050296 5270 Rosid View MSA
123738814 5271 Pentapetalae View MSA
122786835 5272 Eudicot View MSA
122045558 5273 Angiosperm View MSA
121345835 5274 Embryophyte View MSA
123425189 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain