Gene : Cagra.0542s0005 C. grandiflora v1.1
Defline:  (1 of 2) PTHR21559 - DYSTROGLYCAN-RELATED Genomic Order:  5
Name:  ? Cagra.0542s0005 Secondary Identifier:  ? PAC:28916823
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0542s0005 0.5kb upstream 0.5kb upstream 2559 true Scaffold542: 16546-19104 Capsella grandiflora
Cagra.0542s0005 0.5kb upstream 0.5kb upstream 500 false Scaffold542: 18605-19104 Capsella grandiflora
Cagra.0542s0005 0.5kb downstream 0.5kb downstream 2559 true Scaffold542: 16046-18604 Capsella grandiflora
Cagra.0542s0005 0.5kb downstream 0.5kb downstream 500 false Scaffold542: 16046-16545 Capsella grandiflora
Cagra.0542s0005 1.0kb upstream 1.0kb upstream 3059 true Scaffold542: 16546-19604 Capsella grandiflora
Cagra.0542s0005 1.0kb upstream 1.0kb upstream 1000 false Scaffold542: 18605-19604 Capsella grandiflora
Cagra.0542s0005 1.0kb downstream 1.0kb downstream 3059 true Scaffold542: 15546-18604 Capsella grandiflora
Cagra.0542s0005 1.0kb downstream 1.0kb downstream 1000 false Scaffold542: 15546-16545 Capsella grandiflora
Cagra.0542s0005 2.0kb upstream 2.0kb upstream 4059 true Scaffold542: 16546-20604 Capsella grandiflora
Cagra.0542s0005 2.0kb upstream 2.0kb upstream 2000 false Scaffold542: 18605-20604 Capsella grandiflora
Cagra.0542s0005 2.0kb downstream 2.0kb downstream 4059 true Scaffold542: 14546-18604 Capsella grandiflora
Cagra.0542s0005 2.0kb downstream 2.0kb downstream 2000 false Scaffold542: 14546-16545 Capsella grandiflora
Cagra.0542s0005 5.0kb upstream 5.0kb upstream 7059 true Scaffold542: 16546-23604 Capsella grandiflora
Cagra.0542s0005 5.0kb upstream 5.0kb upstream 5000 false Scaffold542: 18605-23604 Capsella grandiflora
Cagra.0542s0005 5.0kb downstream 5.0kb downstream 7059 true Scaffold542: 11546-18604 Capsella grandiflora
Cagra.0542s0005 5.0kb downstream 5.0kb downstream 5000 false Scaffold542: 11546-16545 Capsella grandiflora
Cagra.0542s0005 10.0kb upstream 10.0kb upstream 12059 true Scaffold542: 16546-28604 Capsella grandiflora
Cagra.0542s0005 10.0kb upstream 10.0kb upstream 10000 false Scaffold542: 18605-28604 Capsella grandiflora
Cagra.0542s0005 10.0kb downstream 10.0kb downstream 12059 true Scaffold542: 6546-18604 Capsella grandiflora
Cagra.0542s0005 10.0kb downstream 10.0kb downstream 10000 false Scaffold542: 6546-16545 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122368002 5261 Brassicaceae View MSA
123840426 5264 Brassicales-Malvales View MSA
124344471 5266 SBM View MSA
124251971 5268 Malvidae View MSA
124050819 5270 Rosid View MSA
123744340 5271 Pentapetalae View MSA
122794905 5272 Eudicot View MSA
122051166 5273 Angiosperm View MSA
121312323 5274 Embryophyte View MSA
123349506 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain