Gene : Cagra.0483s0066 C. grandiflora v1.1
Defline:  (1 of 4) PTHR10315:SF34 - E3 UBIQUITIN-PROTEIN LIGASE SINAT3-RELATED Genomic Order:  66
Name:  ? Cagra.0483s0066 Secondary Identifier:  ? PAC:28900467
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-7511 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0483s0066 0.5kb upstream 0.5kb upstream 2798 true Scaffold483: 236972-239769 Capsella grandiflora
Cagra.0483s0066 0.5kb upstream 0.5kb upstream 500 false Scaffold483: 236972-237471 Capsella grandiflora
Cagra.0483s0066 0.5kb downstream 0.5kb downstream 2798 true Scaffold483: 237472-240269 Capsella grandiflora
Cagra.0483s0066 0.5kb downstream 0.5kb downstream 500 false Scaffold483: 239770-240269 Capsella grandiflora
Cagra.0483s0066 1.0kb upstream 1.0kb upstream 3298 true Scaffold483: 236472-239769 Capsella grandiflora
Cagra.0483s0066 1.0kb upstream 1.0kb upstream 1000 false Scaffold483: 236472-237471 Capsella grandiflora
Cagra.0483s0066 1.0kb downstream 1.0kb downstream 3298 true Scaffold483: 237472-240769 Capsella grandiflora
Cagra.0483s0066 1.0kb downstream 1.0kb downstream 1000 false Scaffold483: 239770-240769 Capsella grandiflora
Cagra.0483s0066 2.0kb upstream 2.0kb upstream 4298 true Scaffold483: 235472-239769 Capsella grandiflora
Cagra.0483s0066 2.0kb upstream 2.0kb upstream 2000 false Scaffold483: 235472-237471 Capsella grandiflora
Cagra.0483s0066 2.0kb downstream 2.0kb downstream 4298 true Scaffold483: 237472-241769 Capsella grandiflora
Cagra.0483s0066 2.0kb downstream 2.0kb downstream 2000 false Scaffold483: 239770-241769 Capsella grandiflora
Cagra.0483s0066 5.0kb upstream 5.0kb upstream 7298 true Scaffold483: 232472-239769 Capsella grandiflora
Cagra.0483s0066 5.0kb upstream 5.0kb upstream 5000 false Scaffold483: 232472-237471 Capsella grandiflora
Cagra.0483s0066 5.0kb downstream 5.0kb downstream 7298 true Scaffold483: 237472-244769 Capsella grandiflora
Cagra.0483s0066 5.0kb downstream 5.0kb downstream 5000 false Scaffold483: 239770-244769 Capsella grandiflora
Cagra.0483s0066 10.0kb upstream 10.0kb upstream 12298 true Scaffold483: 227472-239769 Capsella grandiflora
Cagra.0483s0066 10.0kb upstream 10.0kb upstream 10000 false Scaffold483: 227472-237471 Capsella grandiflora
Cagra.0483s0066 10.0kb downstream 10.0kb downstream 12298 true Scaffold483: 237472-249769 Capsella grandiflora
Cagra.0483s0066 10.0kb downstream 10.0kb downstream 10000 false Scaffold483: 239770-249769 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122369322 5261 Brassicaceae View MSA
123836007 5264 Brassicales-Malvales View MSA
124338508 5266 SBM View MSA
124251160 5268 Malvidae View MSA
124072834 5270 Rosid View MSA
123746623 5271 Pentapetalae View MSA
122796827 5272 Eudicot View MSA
122050638 5273 Angiosperm View MSA
121350928 5274 Embryophyte View MSA
123381939 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain