Gene : Cagra.0487s0009 C. grandiflora v1.1
Defline:  (1 of 2) PTHR21726//PTHR21726:SF39 - PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE SUBUNIT P DOWN SYNDROME CRITICAL REGION PROTEIN 5 -RELATED Genomic Order:  9
Name:  ? Cagra.0487s0009 Secondary Identifier:  ? PAC:28895861
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0487s0009 0.5kb upstream 0.5kb upstream 3612 true Scaffold487: 37878-41489 Capsella grandiflora
Cagra.0487s0009 0.5kb upstream 0.5kb upstream 500 false Scaffold487: 37878-38377 Capsella grandiflora
Cagra.0487s0009 0.5kb downstream 0.5kb downstream 3612 true Scaffold487: 38378-41989 Capsella grandiflora
Cagra.0487s0009 0.5kb downstream 0.5kb downstream 500 false Scaffold487: 41490-41989 Capsella grandiflora
Cagra.0487s0009 1.0kb upstream 1.0kb upstream 4112 true Scaffold487: 37378-41489 Capsella grandiflora
Cagra.0487s0009 1.0kb upstream 1.0kb upstream 1000 false Scaffold487: 37378-38377 Capsella grandiflora
Cagra.0487s0009 1.0kb downstream 1.0kb downstream 4112 true Scaffold487: 38378-42489 Capsella grandiflora
Cagra.0487s0009 1.0kb downstream 1.0kb downstream 1000 false Scaffold487: 41490-42489 Capsella grandiflora
Cagra.0487s0009 2.0kb upstream 2.0kb upstream 5112 true Scaffold487: 36378-41489 Capsella grandiflora
Cagra.0487s0009 2.0kb upstream 2.0kb upstream 2000 false Scaffold487: 36378-38377 Capsella grandiflora
Cagra.0487s0009 2.0kb downstream 2.0kb downstream 5112 true Scaffold487: 38378-43489 Capsella grandiflora
Cagra.0487s0009 2.0kb downstream 2.0kb downstream 2000 false Scaffold487: 41490-43489 Capsella grandiflora
Cagra.0487s0009 5.0kb upstream 5.0kb upstream 8112 true Scaffold487: 33378-41489 Capsella grandiflora
Cagra.0487s0009 5.0kb upstream 5.0kb upstream 5000 false Scaffold487: 33378-38377 Capsella grandiflora
Cagra.0487s0009 5.0kb downstream 5.0kb downstream 8112 true Scaffold487: 38378-46489 Capsella grandiflora
Cagra.0487s0009 5.0kb downstream 5.0kb downstream 5000 false Scaffold487: 41490-46489 Capsella grandiflora
Cagra.0487s0009 10.0kb upstream 10.0kb upstream 13112 true Scaffold487: 28378-41489 Capsella grandiflora
Cagra.0487s0009 10.0kb upstream 10.0kb upstream 10000 false Scaffold487: 28378-38377 Capsella grandiflora
Cagra.0487s0009 10.0kb downstream 10.0kb downstream 13112 true Scaffold487: 38378-51489 Capsella grandiflora
Cagra.0487s0009 10.0kb downstream 10.0kb downstream 10000 false Scaffold487: 41490-51489 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122374772 5261 Brassicaceae View MSA
123828679 5264 Brassicales-Malvales View MSA
124343030 5266 SBM View MSA
124245525 5268 Malvidae View MSA
124071026 5270 Rosid View MSA
123753280 5271 Pentapetalae View MSA
122795143 5272 Eudicot View MSA
122044494 5273 Angiosperm View MSA
121350314 5274 Embryophyte View MSA
123381675 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain