Gene : Cagra.0493s0012 C. grandiflora v1.1
Defline:  (1 of 2) PTHR24286:SF10 - ABSCISIC ACID 8'-HYDROXYLASE 1-RELATED Genomic Order:  12
Name:  ? Cagra.0493s0012 Secondary Identifier:  ? PAC:28902952
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-5271 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0493s0012 0.5kb upstream 0.5kb upstream 2732 true Scaffold493: 42469-45200 Capsella grandiflora
Cagra.0493s0012 0.5kb upstream 0.5kb upstream 500 false Scaffold493: 44701-45200 Capsella grandiflora
Cagra.0493s0012 0.5kb downstream 0.5kb downstream 2732 true Scaffold493: 41969-44700 Capsella grandiflora
Cagra.0493s0012 0.5kb downstream 0.5kb downstream 500 false Scaffold493: 41969-42468 Capsella grandiflora
Cagra.0493s0012 1.0kb upstream 1.0kb upstream 3232 true Scaffold493: 42469-45700 Capsella grandiflora
Cagra.0493s0012 1.0kb upstream 1.0kb upstream 1000 false Scaffold493: 44701-45700 Capsella grandiflora
Cagra.0493s0012 1.0kb downstream 1.0kb downstream 3232 true Scaffold493: 41469-44700 Capsella grandiflora
Cagra.0493s0012 1.0kb downstream 1.0kb downstream 1000 false Scaffold493: 41469-42468 Capsella grandiflora
Cagra.0493s0012 2.0kb upstream 2.0kb upstream 4232 true Scaffold493: 42469-46700 Capsella grandiflora
Cagra.0493s0012 2.0kb upstream 2.0kb upstream 2000 false Scaffold493: 44701-46700 Capsella grandiflora
Cagra.0493s0012 2.0kb downstream 2.0kb downstream 4232 true Scaffold493: 40469-44700 Capsella grandiflora
Cagra.0493s0012 2.0kb downstream 2.0kb downstream 2000 false Scaffold493: 40469-42468 Capsella grandiflora
Cagra.0493s0012 5.0kb upstream 5.0kb upstream 7232 true Scaffold493: 42469-49700 Capsella grandiflora
Cagra.0493s0012 5.0kb upstream 5.0kb upstream 5000 false Scaffold493: 44701-49700 Capsella grandiflora
Cagra.0493s0012 5.0kb downstream 5.0kb downstream 7232 true Scaffold493: 37469-44700 Capsella grandiflora
Cagra.0493s0012 5.0kb downstream 5.0kb downstream 5000 false Scaffold493: 37469-42468 Capsella grandiflora
Cagra.0493s0012 10.0kb upstream 10.0kb upstream 12232 true Scaffold493: 42469-54700 Capsella grandiflora
Cagra.0493s0012 10.0kb upstream 10.0kb upstream 10000 false Scaffold493: 44701-54700 Capsella grandiflora
Cagra.0493s0012 10.0kb downstream 10.0kb downstream 12232 true Scaffold493: 32469-44700 Capsella grandiflora
Cagra.0493s0012 10.0kb downstream 10.0kb downstream 10000 false Scaffold493: 32469-42468 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122379349 5261 Brassicaceae View MSA
123839116 5264 Brassicales-Malvales View MSA
124341154 5266 SBM View MSA
124251238 5268 Malvidae View MSA
124067549 5270 Rosid View MSA
123747407 5271 Pentapetalae View MSA
122789954 5272 Eudicot View MSA
122044932 5273 Angiosperm View MSA
123429088 5275 Viridiplantae View MSA
121350004 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain