Gene : Cagra.0612s0077 C. grandiflora v1.1
Defline:  (1 of 7) 6.1.1.15 - Proline--tRNA ligase / Prolyl-tRNA synthetase Genomic Order:  77
Name:  ? Cagra.0612s0077 Secondary Identifier:  ? PAC:28917535
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora TRNA-CHARGING-PWY Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0612s0077 0.5kb upstream 0.5kb upstream 3392 true Scaffold612: 273214-276605 Capsella grandiflora
Cagra.0612s0077 0.5kb upstream 0.5kb upstream 500 false Scaffold612: 276106-276605 Capsella grandiflora
Cagra.0612s0077 0.5kb downstream 0.5kb downstream 3392 true Scaffold612: 272714-276105 Capsella grandiflora
Cagra.0612s0077 0.5kb downstream 0.5kb downstream 500 false Scaffold612: 272714-273213 Capsella grandiflora
Cagra.0612s0077 1.0kb upstream 1.0kb upstream 3892 true Scaffold612: 273214-277105 Capsella grandiflora
Cagra.0612s0077 1.0kb upstream 1.0kb upstream 1000 false Scaffold612: 276106-277105 Capsella grandiflora
Cagra.0612s0077 1.0kb downstream 1.0kb downstream 3892 true Scaffold612: 272214-276105 Capsella grandiflora
Cagra.0612s0077 1.0kb downstream 1.0kb downstream 1000 false Scaffold612: 272214-273213 Capsella grandiflora
Cagra.0612s0077 2.0kb upstream 2.0kb upstream 4892 true Scaffold612: 273214-278105 Capsella grandiflora
Cagra.0612s0077 2.0kb upstream 2.0kb upstream 2000 false Scaffold612: 276106-278105 Capsella grandiflora
Cagra.0612s0077 2.0kb downstream 2.0kb downstream 4892 true Scaffold612: 271214-276105 Capsella grandiflora
Cagra.0612s0077 2.0kb downstream 2.0kb downstream 2000 false Scaffold612: 271214-273213 Capsella grandiflora
Cagra.0612s0077 5.0kb upstream 5.0kb upstream 7892 true Scaffold612: 273214-281105 Capsella grandiflora
Cagra.0612s0077 5.0kb upstream 5.0kb upstream 5000 false Scaffold612: 276106-281105 Capsella grandiflora
Cagra.0612s0077 5.0kb downstream 5.0kb downstream 7892 true Scaffold612: 268214-276105 Capsella grandiflora
Cagra.0612s0077 5.0kb downstream 5.0kb downstream 5000 false Scaffold612: 268214-273213 Capsella grandiflora
Cagra.0612s0077 10.0kb upstream 10.0kb upstream 12892 true Scaffold612: 273214-286105 Capsella grandiflora
Cagra.0612s0077 10.0kb upstream 10.0kb upstream 10000 false Scaffold612: 276106-286105 Capsella grandiflora
Cagra.0612s0077 10.0kb downstream 10.0kb downstream 12892 true Scaffold612: 263214-276105 Capsella grandiflora
Cagra.0612s0077 10.0kb downstream 10.0kb downstream 10000 false Scaffold612: 263214-273213 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122365316 5261 Brassicaceae View MSA
123831041 5264 Brassicales-Malvales View MSA
124348511 5266 SBM View MSA
124247467 5268 Malvidae View MSA
124064223 5270 Rosid View MSA
123739091 5271 Pentapetalae View MSA
122787738 5272 Eudicot View MSA
122046547 5273 Angiosperm View MSA
121346675 5274 Embryophyte View MSA
123428629 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain