Gene : Cagra.0618s0009 C. grandiflora v1.1
Defline:  (1 of 46) 3.2.1.15 - Polygalacturonase / Pectinase Genomic Order:  9
Name:  ? Cagra.0618s0009 Secondary Identifier:  ? PAC:28914425
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-1081 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0618s0009 0.5kb upstream 0.5kb upstream 3593 true Scaffold618: 33465-37057 Capsella grandiflora
Cagra.0618s0009 0.5kb upstream 0.5kb upstream 500 false Scaffold618: 36558-37057 Capsella grandiflora
Cagra.0618s0009 0.5kb downstream 0.5kb downstream 3593 true Scaffold618: 32965-36557 Capsella grandiflora
Cagra.0618s0009 0.5kb downstream 0.5kb downstream 500 false Scaffold618: 32965-33464 Capsella grandiflora
Cagra.0618s0009 1.0kb upstream 1.0kb upstream 4093 true Scaffold618: 33465-37557 Capsella grandiflora
Cagra.0618s0009 1.0kb upstream 1.0kb upstream 1000 false Scaffold618: 36558-37557 Capsella grandiflora
Cagra.0618s0009 1.0kb downstream 1.0kb downstream 4093 true Scaffold618: 32465-36557 Capsella grandiflora
Cagra.0618s0009 1.0kb downstream 1.0kb downstream 1000 false Scaffold618: 32465-33464 Capsella grandiflora
Cagra.0618s0009 2.0kb upstream 2.0kb upstream 5093 true Scaffold618: 33465-38557 Capsella grandiflora
Cagra.0618s0009 2.0kb upstream 2.0kb upstream 2000 false Scaffold618: 36558-38557 Capsella grandiflora
Cagra.0618s0009 2.0kb downstream 2.0kb downstream 5093 true Scaffold618: 31465-36557 Capsella grandiflora
Cagra.0618s0009 2.0kb downstream 2.0kb downstream 2000 false Scaffold618: 31465-33464 Capsella grandiflora
Cagra.0618s0009 5.0kb upstream 5.0kb upstream 8093 true Scaffold618: 33465-41557 Capsella grandiflora
Cagra.0618s0009 5.0kb upstream 5.0kb upstream 5000 false Scaffold618: 36558-41557 Capsella grandiflora
Cagra.0618s0009 5.0kb downstream 5.0kb downstream 8093 true Scaffold618: 28465-36557 Capsella grandiflora
Cagra.0618s0009 5.0kb downstream 5.0kb downstream 5000 false Scaffold618: 28465-33464 Capsella grandiflora
Cagra.0618s0009 10.0kb upstream 10.0kb upstream 13093 true Scaffold618: 33465-46557 Capsella grandiflora
Cagra.0618s0009 10.0kb upstream 10.0kb upstream 10000 false Scaffold618: 36558-46557 Capsella grandiflora
Cagra.0618s0009 10.0kb downstream 10.0kb downstream 13093 true Scaffold618: 23465-36557 Capsella grandiflora
Cagra.0618s0009 10.0kb downstream 10.0kb downstream 10000 false Scaffold618: 23465-33464 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122372611 5261 Brassicaceae View MSA
123835792 5264 Brassicales-Malvales View MSA
124337988 5266 SBM View MSA
124242051 5268 Malvidae View MSA
124065487 5270 Rosid View MSA
123736627 5271 Pentapetalae View MSA
122795582 5272 Eudicot View MSA
122048646 5273 Angiosperm View MSA
121350352 5274 Embryophyte View MSA
123381691 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain