Gene : Cagra.0596s0050 C. grandiflora v1.1
Defline:  (1 of 21) PF00651//PF03000 - BTB/POZ domain (BTB) // NPH3 family (NPH3) Genomic Order:  50
Name:  ? Cagra.0596s0050 Secondary Identifier:  ? PAC:28920045
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0596s0050 0.5kb upstream 0.5kb upstream 2586 true Scaffold596: 214739-217324 Capsella grandiflora
Cagra.0596s0050 0.5kb upstream 0.5kb upstream 500 false Scaffold596: 214739-215238 Capsella grandiflora
Cagra.0596s0050 0.5kb downstream 0.5kb downstream 2586 true Scaffold596: 215239-217824 Capsella grandiflora
Cagra.0596s0050 0.5kb downstream 0.5kb downstream 500 false Scaffold596: 217325-217824 Capsella grandiflora
Cagra.0596s0050 1.0kb upstream 1.0kb upstream 3086 true Scaffold596: 214239-217324 Capsella grandiflora
Cagra.0596s0050 1.0kb upstream 1.0kb upstream 1000 false Scaffold596: 214239-215238 Capsella grandiflora
Cagra.0596s0050 1.0kb downstream 1.0kb downstream 3086 true Scaffold596: 215239-218324 Capsella grandiflora
Cagra.0596s0050 1.0kb downstream 1.0kb downstream 1000 false Scaffold596: 217325-218324 Capsella grandiflora
Cagra.0596s0050 2.0kb upstream 2.0kb upstream 4086 true Scaffold596: 213239-217324 Capsella grandiflora
Cagra.0596s0050 2.0kb upstream 2.0kb upstream 2000 false Scaffold596: 213239-215238 Capsella grandiflora
Cagra.0596s0050 2.0kb downstream 2.0kb downstream 4086 true Scaffold596: 215239-219324 Capsella grandiflora
Cagra.0596s0050 2.0kb downstream 2.0kb downstream 2000 false Scaffold596: 217325-219324 Capsella grandiflora
Cagra.0596s0050 5.0kb upstream 5.0kb upstream 7086 true Scaffold596: 210239-217324 Capsella grandiflora
Cagra.0596s0050 5.0kb upstream 5.0kb upstream 5000 false Scaffold596: 210239-215238 Capsella grandiflora
Cagra.0596s0050 5.0kb downstream 5.0kb downstream 7086 true Scaffold596: 215239-222324 Capsella grandiflora
Cagra.0596s0050 5.0kb downstream 5.0kb downstream 5000 false Scaffold596: 217325-222324 Capsella grandiflora
Cagra.0596s0050 10.0kb upstream 10.0kb upstream 12086 true Scaffold596: 205239-217324 Capsella grandiflora
Cagra.0596s0050 10.0kb upstream 10.0kb upstream 10000 false Scaffold596: 205239-215238 Capsella grandiflora
Cagra.0596s0050 10.0kb downstream 10.0kb downstream 12086 true Scaffold596: 215239-227324 Capsella grandiflora
Cagra.0596s0050 10.0kb downstream 10.0kb downstream 10000 false Scaffold596: 217325-227324 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122362959 5261 Brassicaceae View MSA
123798459 5264 Brassicales-Malvales View MSA
124296091 5266 SBM View MSA
124148348 5268 Malvidae View MSA
124071972 5270 Rosid View MSA
123743168 5271 Pentapetalae View MSA
122791271 5272 Eudicot View MSA
122050644 5273 Angiosperm View MSA
121312043 5274 Embryophyte View MSA
123349254 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain