Gene : Cagra.0570s0017 C. grandiflora v1.1
Defline:  (1 of 3) PTHR32219:SF2 - PROTON PUMP-INTERACTOR 1-RELATED Genomic Order:  17
Name:  ? Cagra.0570s0017 Secondary Identifier:  ? PAC:28903540
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0570s0017 0.5kb upstream 0.5kb upstream 3066 true Scaffold570: 59133-62198 Capsella grandiflora
Cagra.0570s0017 0.5kb upstream 0.5kb upstream 500 false Scaffold570: 61699-62198 Capsella grandiflora
Cagra.0570s0017 0.5kb downstream 0.5kb downstream 3066 true Scaffold570: 58633-61698 Capsella grandiflora
Cagra.0570s0017 0.5kb downstream 0.5kb downstream 500 false Scaffold570: 58633-59132 Capsella grandiflora
Cagra.0570s0017 1.0kb upstream 1.0kb upstream 3566 true Scaffold570: 59133-62698 Capsella grandiflora
Cagra.0570s0017 1.0kb upstream 1.0kb upstream 1000 false Scaffold570: 61699-62698 Capsella grandiflora
Cagra.0570s0017 1.0kb downstream 1.0kb downstream 3566 true Scaffold570: 58133-61698 Capsella grandiflora
Cagra.0570s0017 1.0kb downstream 1.0kb downstream 1000 false Scaffold570: 58133-59132 Capsella grandiflora
Cagra.0570s0017 2.0kb upstream 2.0kb upstream 4566 true Scaffold570: 59133-63698 Capsella grandiflora
Cagra.0570s0017 2.0kb upstream 2.0kb upstream 2000 false Scaffold570: 61699-63698 Capsella grandiflora
Cagra.0570s0017 2.0kb downstream 2.0kb downstream 4566 true Scaffold570: 57133-61698 Capsella grandiflora
Cagra.0570s0017 2.0kb downstream 2.0kb downstream 2000 false Scaffold570: 57133-59132 Capsella grandiflora
Cagra.0570s0017 5.0kb upstream 5.0kb upstream 7566 true Scaffold570: 59133-66698 Capsella grandiflora
Cagra.0570s0017 5.0kb upstream 5.0kb upstream 5000 false Scaffold570: 61699-66698 Capsella grandiflora
Cagra.0570s0017 5.0kb downstream 5.0kb downstream 7566 true Scaffold570: 54133-61698 Capsella grandiflora
Cagra.0570s0017 5.0kb downstream 5.0kb downstream 5000 false Scaffold570: 54133-59132 Capsella grandiflora
Cagra.0570s0017 10.0kb upstream 10.0kb upstream 12566 true Scaffold570: 59133-71698 Capsella grandiflora
Cagra.0570s0017 10.0kb upstream 10.0kb upstream 10000 false Scaffold570: 61699-71698 Capsella grandiflora
Cagra.0570s0017 10.0kb downstream 10.0kb downstream 12566 true Scaffold570: 49133-61698 Capsella grandiflora
Cagra.0570s0017 10.0kb downstream 10.0kb downstream 10000 false Scaffold570: 49133-59132 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122360566 5261 Brassicaceae View MSA
123830033 5264 Brassicales-Malvales View MSA
124349956 5266 SBM View MSA
124251344 5268 Malvidae View MSA
124070239 5270 Rosid View MSA
123743643 5271 Pentapetalae View MSA
122791245 5272 Eudicot View MSA
122042021 5273 Angiosperm View MSA
121350876 5274 Embryophyte View MSA
123428188 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain