Gene : Cagra.0712s0032 C. grandiflora v1.1
Defline:  (1 of 1) PTHR21319//PTHR21319:SF5 - RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 Genomic Order:  32
Name:  ? Cagra.0712s0032 Secondary Identifier:  ? PAC:28899889
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-7511 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0712s0032 0.5kb upstream 0.5kb upstream 3385 true Scaffold712: 123880-127264 Capsella grandiflora
Cagra.0712s0032 0.5kb upstream 0.5kb upstream 500 false Scaffold712: 123880-124379 Capsella grandiflora
Cagra.0712s0032 0.5kb downstream 0.5kb downstream 3385 true Scaffold712: 124380-127764 Capsella grandiflora
Cagra.0712s0032 0.5kb downstream 0.5kb downstream 500 false Scaffold712: 127265-127764 Capsella grandiflora
Cagra.0712s0032 1.0kb upstream 1.0kb upstream 3885 true Scaffold712: 123380-127264 Capsella grandiflora
Cagra.0712s0032 1.0kb upstream 1.0kb upstream 1000 false Scaffold712: 123380-124379 Capsella grandiflora
Cagra.0712s0032 1.0kb downstream 1.0kb downstream 3885 true Scaffold712: 124380-128264 Capsella grandiflora
Cagra.0712s0032 1.0kb downstream 1.0kb downstream 1000 false Scaffold712: 127265-128264 Capsella grandiflora
Cagra.0712s0032 2.0kb upstream 2.0kb upstream 4885 true Scaffold712: 122380-127264 Capsella grandiflora
Cagra.0712s0032 2.0kb upstream 2.0kb upstream 2000 false Scaffold712: 122380-124379 Capsella grandiflora
Cagra.0712s0032 2.0kb downstream 2.0kb downstream 4885 true Scaffold712: 124380-129264 Capsella grandiflora
Cagra.0712s0032 2.0kb downstream 2.0kb downstream 2000 false Scaffold712: 127265-129264 Capsella grandiflora
Cagra.0712s0032 5.0kb upstream 5.0kb upstream 7885 true Scaffold712: 119380-127264 Capsella grandiflora
Cagra.0712s0032 5.0kb upstream 5.0kb upstream 5000 false Scaffold712: 119380-124379 Capsella grandiflora
Cagra.0712s0032 5.0kb downstream 5.0kb downstream 7885 true Scaffold712: 124380-132264 Capsella grandiflora
Cagra.0712s0032 5.0kb downstream 5.0kb downstream 5000 false Scaffold712: 127265-132264 Capsella grandiflora
Cagra.0712s0032 10.0kb upstream 10.0kb upstream 12885 true Scaffold712: 114380-127264 Capsella grandiflora
Cagra.0712s0032 10.0kb upstream 10.0kb upstream 10000 false Scaffold712: 114380-124379 Capsella grandiflora
Cagra.0712s0032 10.0kb downstream 10.0kb downstream 12885 true Scaffold712: 124380-137264 Capsella grandiflora
Cagra.0712s0032 10.0kb downstream 10.0kb downstream 10000 false Scaffold712: 127265-137264 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122366853 5261 Brassicaceae View MSA
123828340 5264 Brassicales-Malvales View MSA
124340435 5266 SBM View MSA
124251521 5268 Malvidae View MSA
124067904 5270 Rosid View MSA
123739632 5271 Pentapetalae View MSA
122785839 5272 Eudicot View MSA
122043981 5273 Angiosperm View MSA
123428990 5275 Viridiplantae View MSA
121310221 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain