Gene : Cagra.0690s0017 C. grandiflora v1.1
Defline:  (1 of 2) PTHR10126 - TATA-BOX BINDING PROTEIN Genomic Order:  17
Name:  ? Cagra.0690s0017 Secondary Identifier:  ? PAC:28893760
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0690s0017 0.5kb upstream 0.5kb upstream 2966 true Scaffold690: 84099-87064 Capsella grandiflora
Cagra.0690s0017 0.5kb upstream 0.5kb upstream 500 false Scaffold690: 86565-87064 Capsella grandiflora
Cagra.0690s0017 0.5kb downstream 0.5kb downstream 2966 true Scaffold690: 83599-86564 Capsella grandiflora
Cagra.0690s0017 0.5kb downstream 0.5kb downstream 500 false Scaffold690: 83599-84098 Capsella grandiflora
Cagra.0690s0017 1.0kb upstream 1.0kb upstream 3466 true Scaffold690: 84099-87564 Capsella grandiflora
Cagra.0690s0017 1.0kb upstream 1.0kb upstream 1000 false Scaffold690: 86565-87564 Capsella grandiflora
Cagra.0690s0017 1.0kb downstream 1.0kb downstream 3466 true Scaffold690: 83099-86564 Capsella grandiflora
Cagra.0690s0017 1.0kb downstream 1.0kb downstream 1000 false Scaffold690: 83099-84098 Capsella grandiflora
Cagra.0690s0017 2.0kb upstream 2.0kb upstream 4466 true Scaffold690: 84099-88564 Capsella grandiflora
Cagra.0690s0017 2.0kb upstream 2.0kb upstream 2000 false Scaffold690: 86565-88564 Capsella grandiflora
Cagra.0690s0017 2.0kb downstream 2.0kb downstream 4466 true Scaffold690: 82099-86564 Capsella grandiflora
Cagra.0690s0017 2.0kb downstream 2.0kb downstream 2000 false Scaffold690: 82099-84098 Capsella grandiflora
Cagra.0690s0017 5.0kb upstream 5.0kb upstream 7466 true Scaffold690: 84099-91564 Capsella grandiflora
Cagra.0690s0017 5.0kb upstream 5.0kb upstream 5000 false Scaffold690: 86565-91564 Capsella grandiflora
Cagra.0690s0017 5.0kb downstream 5.0kb downstream 7466 true Scaffold690: 79099-86564 Capsella grandiflora
Cagra.0690s0017 5.0kb downstream 5.0kb downstream 5000 false Scaffold690: 79099-84098 Capsella grandiflora
Cagra.0690s0017 10.0kb upstream 10.0kb upstream 12466 true Scaffold690: 84099-96564 Capsella grandiflora
Cagra.0690s0017 10.0kb upstream 10.0kb upstream 10000 false Scaffold690: 86565-96564 Capsella grandiflora
Cagra.0690s0017 10.0kb downstream 10.0kb downstream 12466 true Scaffold690: 74099-86564 Capsella grandiflora
Cagra.0690s0017 10.0kb downstream 10.0kb downstream 10000 false Scaffold690: 74099-84098 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122372618 5261 Brassicaceae View MSA
123839847 5264 Brassicales-Malvales View MSA
124341386 5266 SBM View MSA
124247778 5268 Malvidae View MSA
124067896 5270 Rosid View MSA
123751574 5271 Pentapetalae View MSA
122793638 5272 Eudicot View MSA
122046126 5273 Angiosperm View MSA
123429185 5275 Viridiplantae View MSA
121349658 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain