Gene : Cagra.0684s0035 C. grandiflora v1.1
Defline:  (1 of 1) PF00750//PF03485//PF05746 - tRNA synthetases class I (R) (tRNA-synt_1d) // Arginyl tRNA synthetase N terminal domain (Arg_tRNA_synt_N) // DALR anticodon binding domain (DALR_1) Genomic Order:  35
Name:  ? Cagra.0684s0035 Secondary Identifier:  ? PAC:28908089
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora TRNA-CHARGING-PWY Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0684s0035 0.5kb upstream 0.5kb upstream 5393 true Scaffold684: 95592-100984 Capsella grandiflora
Cagra.0684s0035 0.5kb upstream 0.5kb upstream 500 false Scaffold684: 95592-96091 Capsella grandiflora
Cagra.0684s0035 0.5kb downstream 0.5kb downstream 5393 true Scaffold684: 96092-101484 Capsella grandiflora
Cagra.0684s0035 0.5kb downstream 0.5kb downstream 500 false Scaffold684: 100985-101484 Capsella grandiflora
Cagra.0684s0035 1.0kb upstream 1.0kb upstream 5893 true Scaffold684: 95092-100984 Capsella grandiflora
Cagra.0684s0035 1.0kb upstream 1.0kb upstream 1000 false Scaffold684: 95092-96091 Capsella grandiflora
Cagra.0684s0035 1.0kb downstream 1.0kb downstream 5893 true Scaffold684: 96092-101984 Capsella grandiflora
Cagra.0684s0035 1.0kb downstream 1.0kb downstream 1000 false Scaffold684: 100985-101984 Capsella grandiflora
Cagra.0684s0035 2.0kb upstream 2.0kb upstream 6893 true Scaffold684: 94092-100984 Capsella grandiflora
Cagra.0684s0035 2.0kb upstream 2.0kb upstream 2000 false Scaffold684: 94092-96091 Capsella grandiflora
Cagra.0684s0035 2.0kb downstream 2.0kb downstream 6893 true Scaffold684: 96092-102984 Capsella grandiflora
Cagra.0684s0035 2.0kb downstream 2.0kb downstream 2000 false Scaffold684: 100985-102984 Capsella grandiflora
Cagra.0684s0035 5.0kb upstream 5.0kb upstream 9893 true Scaffold684: 91092-100984 Capsella grandiflora
Cagra.0684s0035 5.0kb upstream 5.0kb upstream 5000 false Scaffold684: 91092-96091 Capsella grandiflora
Cagra.0684s0035 5.0kb downstream 5.0kb downstream 9893 true Scaffold684: 96092-105984 Capsella grandiflora
Cagra.0684s0035 5.0kb downstream 5.0kb downstream 5000 false Scaffold684: 100985-105984 Capsella grandiflora
Cagra.0684s0035 10.0kb upstream 10.0kb upstream 14893 true Scaffold684: 86092-100984 Capsella grandiflora
Cagra.0684s0035 10.0kb upstream 10.0kb upstream 10000 false Scaffold684: 86092-96091 Capsella grandiflora
Cagra.0684s0035 10.0kb downstream 10.0kb downstream 14893 true Scaffold684: 96092-110984 Capsella grandiflora
Cagra.0684s0035 10.0kb downstream 10.0kb downstream 10000 false Scaffold684: 100985-110984 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122381542 5261 Brassicaceae View MSA
123837210 5264 Brassicales-Malvales View MSA
124337700 5266 SBM View MSA
124238574 5268 Malvidae View MSA
124068746 5270 Rosid View MSA
123739648 5271 Pentapetalae View MSA
122789806 5272 Eudicot View MSA
122042876 5273 Angiosperm View MSA
121345157 5274 Embryophyte View MSA
123426289 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain