Gene : Cagra.0686s0006 C. grandiflora v1.1
Defline:  (1 of 1) PTHR24067//PTHR24067:SF112 - UBIQUITIN-CONJUGATING ENZYME E2 Genomic Order:  6
Name:  ? Cagra.0686s0006 Secondary Identifier:  ? PAC:28900988
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-7511 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0686s0006 0.5kb upstream 0.5kb upstream 2149 true Scaffold686: 13432-15580 Capsella grandiflora
Cagra.0686s0006 0.5kb upstream 0.5kb upstream 500 false Scaffold686: 15081-15580 Capsella grandiflora
Cagra.0686s0006 0.5kb downstream 0.5kb downstream 2149 true Scaffold686: 12932-15080 Capsella grandiflora
Cagra.0686s0006 0.5kb downstream 0.5kb downstream 500 false Scaffold686: 12932-13431 Capsella grandiflora
Cagra.0686s0006 1.0kb upstream 1.0kb upstream 2649 true Scaffold686: 13432-16080 Capsella grandiflora
Cagra.0686s0006 1.0kb upstream 1.0kb upstream 1000 false Scaffold686: 15081-16080 Capsella grandiflora
Cagra.0686s0006 1.0kb downstream 1.0kb downstream 2649 true Scaffold686: 12432-15080 Capsella grandiflora
Cagra.0686s0006 1.0kb downstream 1.0kb downstream 1000 false Scaffold686: 12432-13431 Capsella grandiflora
Cagra.0686s0006 2.0kb upstream 2.0kb upstream 3649 true Scaffold686: 13432-17080 Capsella grandiflora
Cagra.0686s0006 2.0kb upstream 2.0kb upstream 2000 false Scaffold686: 15081-17080 Capsella grandiflora
Cagra.0686s0006 2.0kb downstream 2.0kb downstream 3649 true Scaffold686: 11432-15080 Capsella grandiflora
Cagra.0686s0006 2.0kb downstream 2.0kb downstream 2000 false Scaffold686: 11432-13431 Capsella grandiflora
Cagra.0686s0006 5.0kb upstream 5.0kb upstream 6649 true Scaffold686: 13432-20080 Capsella grandiflora
Cagra.0686s0006 5.0kb upstream 5.0kb upstream 5000 false Scaffold686: 15081-20080 Capsella grandiflora
Cagra.0686s0006 5.0kb downstream 5.0kb downstream 6649 true Scaffold686: 8432-15080 Capsella grandiflora
Cagra.0686s0006 5.0kb downstream 5.0kb downstream 5000 false Scaffold686: 8432-13431 Capsella grandiflora
Cagra.0686s0006 10.0kb upstream 10.0kb upstream 11649 true Scaffold686: 13432-25080 Capsella grandiflora
Cagra.0686s0006 10.0kb upstream 10.0kb upstream 10000 false Scaffold686: 15081-25080 Capsella grandiflora
Cagra.0686s0006 10.0kb downstream 10.0kb downstream 11649 true Scaffold686: 3432-15080 Capsella grandiflora
Cagra.0686s0006 10.0kb downstream 10.0kb downstream 10000 false Scaffold686: 3432-13431 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122375381 5261 Brassicaceae View MSA
123839488 5264 Brassicales-Malvales View MSA
124344755 5266 SBM View MSA
124236998 5268 Malvidae View MSA
124074734 5270 Rosid View MSA
123752891 5271 Pentapetalae View MSA
122794655 5272 Eudicot View MSA
122047112 5273 Angiosperm View MSA
121344973 5274 Embryophyte View MSA
123425853 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain