Gene : Cagra.0876s0039 C. grandiflora v1.1
Defline:  (1 of 2) PTHR10277//PTHR10277:SF42 - HOMOCITRATE SYNTHASE-RELATED Genomic Order:  39
Name:  ? Cagra.0876s0039 Secondary Identifier:  ? PAC:28899240
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora BRANCHED-CHAIN-AA-SYN-PWY Capsella grandiflora pathologic  
Cgrandiflora LEUSYN-PWY Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0876s0039 0.5kb upstream 0.5kb upstream 4155 true Scaffold876: 132665-136819 Capsella grandiflora
Cagra.0876s0039 0.5kb upstream 0.5kb upstream 500 false Scaffold876: 132665-133164 Capsella grandiflora
Cagra.0876s0039 0.5kb downstream 0.5kb downstream 4155 true Scaffold876: 133165-137319 Capsella grandiflora
Cagra.0876s0039 0.5kb downstream 0.5kb downstream 500 false Scaffold876: 136820-137319 Capsella grandiflora
Cagra.0876s0039 1.0kb upstream 1.0kb upstream 4655 true Scaffold876: 132165-136819 Capsella grandiflora
Cagra.0876s0039 1.0kb upstream 1.0kb upstream 1000 false Scaffold876: 132165-133164 Capsella grandiflora
Cagra.0876s0039 1.0kb downstream 1.0kb downstream 4655 true Scaffold876: 133165-137819 Capsella grandiflora
Cagra.0876s0039 1.0kb downstream 1.0kb downstream 1000 false Scaffold876: 136820-137819 Capsella grandiflora
Cagra.0876s0039 2.0kb upstream 2.0kb upstream 5655 true Scaffold876: 131165-136819 Capsella grandiflora
Cagra.0876s0039 2.0kb upstream 2.0kb upstream 2000 false Scaffold876: 131165-133164 Capsella grandiflora
Cagra.0876s0039 2.0kb downstream 2.0kb downstream 5655 true Scaffold876: 133165-138819 Capsella grandiflora
Cagra.0876s0039 2.0kb downstream 2.0kb downstream 2000 false Scaffold876: 136820-138819 Capsella grandiflora
Cagra.0876s0039 5.0kb upstream 5.0kb upstream 8655 true Scaffold876: 128165-136819 Capsella grandiflora
Cagra.0876s0039 5.0kb upstream 5.0kb upstream 5000 false Scaffold876: 128165-133164 Capsella grandiflora
Cagra.0876s0039 5.0kb downstream 5.0kb downstream 8655 true Scaffold876: 133165-141819 Capsella grandiflora
Cagra.0876s0039 5.0kb downstream 5.0kb downstream 5000 false Scaffold876: 136820-141819 Capsella grandiflora
Cagra.0876s0039 10.0kb upstream 10.0kb upstream 13655 true Scaffold876: 123165-136819 Capsella grandiflora
Cagra.0876s0039 10.0kb upstream 10.0kb upstream 10000 false Scaffold876: 123165-133164 Capsella grandiflora
Cagra.0876s0039 10.0kb downstream 10.0kb downstream 13655 true Scaffold876: 133165-146819 Capsella grandiflora
Cagra.0876s0039 10.0kb downstream 10.0kb downstream 10000 false Scaffold876: 136820-146819 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122376222 5261 Brassicaceae View MSA
123837144 5264 Brassicales-Malvales View MSA
124322248 5266 SBM View MSA
124251393 5268 Malvidae View MSA
124073887 5270 Rosid View MSA
123749835 5271 Pentapetalae View MSA
122795041 5272 Eudicot View MSA
122042075 5273 Angiosperm View MSA
121343846 5274 Embryophyte View MSA
123424493 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain