Gene : Cagra.0844s0018 C. grandiflora v1.1
Defline:  (1 of 14) PF03108//PF04434//PF10551 - MuDR family transposase (DBD_Tnp_Mut) // SWIM zinc finger (SWIM) // MULE transposase domain (MULE) Genomic Order:  18
Name:  ? Cagra.0844s0018 Secondary Identifier:  ? PAC:28914903
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0844s0018 0.5kb upstream 0.5kb upstream 2771 true Scaffold844: 84062-86832 Capsella grandiflora
Cagra.0844s0018 0.5kb upstream 0.5kb upstream 500 false Scaffold844: 84062-84561 Capsella grandiflora
Cagra.0844s0018 0.5kb downstream 0.5kb downstream 2771 true Scaffold844: 84562-87332 Capsella grandiflora
Cagra.0844s0018 0.5kb downstream 0.5kb downstream 500 false Scaffold844: 86833-87332 Capsella grandiflora
Cagra.0844s0018 1.0kb upstream 1.0kb upstream 3271 true Scaffold844: 83562-86832 Capsella grandiflora
Cagra.0844s0018 1.0kb upstream 1.0kb upstream 1000 false Scaffold844: 83562-84561 Capsella grandiflora
Cagra.0844s0018 1.0kb downstream 1.0kb downstream 3271 true Scaffold844: 84562-87832 Capsella grandiflora
Cagra.0844s0018 1.0kb downstream 1.0kb downstream 1000 false Scaffold844: 86833-87832 Capsella grandiflora
Cagra.0844s0018 2.0kb upstream 2.0kb upstream 4271 true Scaffold844: 82562-86832 Capsella grandiflora
Cagra.0844s0018 2.0kb upstream 2.0kb upstream 2000 false Scaffold844: 82562-84561 Capsella grandiflora
Cagra.0844s0018 2.0kb downstream 2.0kb downstream 4271 true Scaffold844: 84562-88832 Capsella grandiflora
Cagra.0844s0018 2.0kb downstream 2.0kb downstream 2000 false Scaffold844: 86833-88832 Capsella grandiflora
Cagra.0844s0018 5.0kb upstream 5.0kb upstream 7271 true Scaffold844: 79562-86832 Capsella grandiflora
Cagra.0844s0018 5.0kb upstream 5.0kb upstream 5000 false Scaffold844: 79562-84561 Capsella grandiflora
Cagra.0844s0018 5.0kb downstream 5.0kb downstream 7271 true Scaffold844: 84562-91832 Capsella grandiflora
Cagra.0844s0018 5.0kb downstream 5.0kb downstream 5000 false Scaffold844: 86833-91832 Capsella grandiflora
Cagra.0844s0018 10.0kb upstream 10.0kb upstream 12271 true Scaffold844: 74562-86832 Capsella grandiflora
Cagra.0844s0018 10.0kb upstream 10.0kb upstream 10000 false Scaffold844: 74562-84561 Capsella grandiflora
Cagra.0844s0018 10.0kb downstream 10.0kb downstream 12271 true Scaffold844: 84562-96832 Capsella grandiflora
Cagra.0844s0018 10.0kb downstream 10.0kb downstream 10000 false Scaffold844: 86833-96832 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122380064 5261 Brassicaceae View MSA
123802541 5264 Brassicales-Malvales View MSA
124299729 5266 SBM View MSA
124255746 5268 Malvidae View MSA
124051474 5270 Rosid View MSA
123753345 5271 Pentapetalae View MSA
122797917 5272 Eudicot View MSA
122051679 5273 Angiosperm View MSA
121351767 5274 Embryophyte View MSA
123382313 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain