Gene : Cagra.0812s0007 C. grandiflora v1.1
Defline:  (1 of 1) PTHR13152 - TFIIH, POLYPEPTIDE 4 Genomic Order:  7
Name:  ? Cagra.0812s0007 Secondary Identifier:  ? PAC:28919359
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0812s0007 0.5kb upstream 0.5kb upstream 3788 true Scaffold812: 26301-30088 Capsella grandiflora
Cagra.0812s0007 0.5kb upstream 0.5kb upstream 500 false Scaffold812: 26301-26800 Capsella grandiflora
Cagra.0812s0007 0.5kb downstream 0.5kb downstream 3788 true Scaffold812: 26801-30588 Capsella grandiflora
Cagra.0812s0007 0.5kb downstream 0.5kb downstream 500 false Scaffold812: 30089-30588 Capsella grandiflora
Cagra.0812s0007 1.0kb upstream 1.0kb upstream 4288 true Scaffold812: 25801-30088 Capsella grandiflora
Cagra.0812s0007 1.0kb upstream 1.0kb upstream 1000 false Scaffold812: 25801-26800 Capsella grandiflora
Cagra.0812s0007 1.0kb downstream 1.0kb downstream 4288 true Scaffold812: 26801-31088 Capsella grandiflora
Cagra.0812s0007 1.0kb downstream 1.0kb downstream 1000 false Scaffold812: 30089-31088 Capsella grandiflora
Cagra.0812s0007 2.0kb upstream 2.0kb upstream 5288 true Scaffold812: 24801-30088 Capsella grandiflora
Cagra.0812s0007 2.0kb upstream 2.0kb upstream 2000 false Scaffold812: 24801-26800 Capsella grandiflora
Cagra.0812s0007 2.0kb downstream 2.0kb downstream 5288 true Scaffold812: 26801-32088 Capsella grandiflora
Cagra.0812s0007 2.0kb downstream 2.0kb downstream 2000 false Scaffold812: 30089-32088 Capsella grandiflora
Cagra.0812s0007 5.0kb upstream 5.0kb upstream 8288 true Scaffold812: 21801-30088 Capsella grandiflora
Cagra.0812s0007 5.0kb upstream 5.0kb upstream 5000 false Scaffold812: 21801-26800 Capsella grandiflora
Cagra.0812s0007 5.0kb downstream 5.0kb downstream 8288 true Scaffold812: 26801-35088 Capsella grandiflora
Cagra.0812s0007 5.0kb downstream 5.0kb downstream 5000 false Scaffold812: 30089-35088 Capsella grandiflora
Cagra.0812s0007 10.0kb upstream 10.0kb upstream 13288 true Scaffold812: 16801-30088 Capsella grandiflora
Cagra.0812s0007 10.0kb upstream 10.0kb upstream 10000 false Scaffold812: 16801-26800 Capsella grandiflora
Cagra.0812s0007 10.0kb downstream 10.0kb downstream 13288 true Scaffold812: 26801-40088 Capsella grandiflora
Cagra.0812s0007 10.0kb downstream 10.0kb downstream 10000 false Scaffold812: 30089-40088 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122371854 5261 Brassicaceae View MSA
123832858 5264 Brassicales-Malvales View MSA
124321828 5266 SBM View MSA
124238934 5268 Malvidae View MSA
124050287 5270 Rosid View MSA
123747685 5271 Pentapetalae View MSA
122797891 5272 Eudicot View MSA
122042198 5273 Angiosperm View MSA
121346770 5274 Embryophyte View MSA
123427579 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain