Gene : Cagra.0993s0042 C. grandiflora v1.1
Defline:  (1 of 2) PTHR18934:SF83 - PRE-MRNA-SPLICING FACTOR ATP-DEPENDENT RNA HELICASE DHX16-RELATED Genomic Order:  42
Name:  ? Cagra.0993s0042 Secondary Identifier:  ? PAC:28903410
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0993s0042 0.5kb upstream 0.5kb upstream 7657 true Scaffold993: 137909-145565 Capsella grandiflora
Cagra.0993s0042 0.5kb upstream 0.5kb upstream 500 false Scaffold993: 137909-138408 Capsella grandiflora
Cagra.0993s0042 0.5kb downstream 0.5kb downstream 7657 true Scaffold993: 138409-146065 Capsella grandiflora
Cagra.0993s0042 0.5kb downstream 0.5kb downstream 500 false Scaffold993: 145566-146065 Capsella grandiflora
Cagra.0993s0042 1.0kb upstream 1.0kb upstream 8157 true Scaffold993: 137409-145565 Capsella grandiflora
Cagra.0993s0042 1.0kb upstream 1.0kb upstream 1000 false Scaffold993: 137409-138408 Capsella grandiflora
Cagra.0993s0042 1.0kb downstream 1.0kb downstream 8157 true Scaffold993: 138409-146565 Capsella grandiflora
Cagra.0993s0042 1.0kb downstream 1.0kb downstream 1000 false Scaffold993: 145566-146565 Capsella grandiflora
Cagra.0993s0042 2.0kb upstream 2.0kb upstream 9157 true Scaffold993: 136409-145565 Capsella grandiflora
Cagra.0993s0042 2.0kb upstream 2.0kb upstream 2000 false Scaffold993: 136409-138408 Capsella grandiflora
Cagra.0993s0042 2.0kb downstream 2.0kb downstream 9157 true Scaffold993: 138409-147565 Capsella grandiflora
Cagra.0993s0042 2.0kb downstream 2.0kb downstream 2000 false Scaffold993: 145566-147565 Capsella grandiflora
Cagra.0993s0042 5.0kb upstream 5.0kb upstream 12157 true Scaffold993: 133409-145565 Capsella grandiflora
Cagra.0993s0042 5.0kb upstream 5.0kb upstream 5000 false Scaffold993: 133409-138408 Capsella grandiflora
Cagra.0993s0042 5.0kb downstream 5.0kb downstream 12157 true Scaffold993: 138409-150565 Capsella grandiflora
Cagra.0993s0042 5.0kb downstream 5.0kb downstream 5000 false Scaffold993: 145566-150565 Capsella grandiflora
Cagra.0993s0042 10.0kb upstream 10.0kb upstream 17157 true Scaffold993: 128409-145565 Capsella grandiflora
Cagra.0993s0042 10.0kb upstream 10.0kb upstream 10000 false Scaffold993: 128409-138408 Capsella grandiflora
Cagra.0993s0042 10.0kb downstream 10.0kb downstream 17157 true Scaffold993: 138409-155565 Capsella grandiflora
Cagra.0993s0042 10.0kb downstream 10.0kb downstream 10000 false Scaffold993: 145566-155565 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122377575 5261 Brassicaceae View MSA
123801571 5264 Brassicales-Malvales View MSA
124298858 5266 SBM View MSA
124252464 5268 Malvidae View MSA
124065617 5270 Rosid View MSA
123749585 5271 Pentapetalae View MSA
122791616 5272 Eudicot View MSA
122047239 5273 Angiosperm View MSA
121347045 5274 Embryophyte View MSA
123427564 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain