Gene : Cagra.0932s0010 C. grandiflora v1.1
Defline:  (1 of 1) PTHR23023:SF135 - INDOLE-3-PYRUVATE MONOOXYGENASE YUCCA10-RELATED Genomic Order:  10
Name:  ? Cagra.0932s0010 Secondary Identifier:  ? PAC:28918592
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWYDQC-4 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0932s0010 0.5kb upstream 0.5kb upstream 2514 true Scaffold932: 34272-36785 Capsella grandiflora
Cagra.0932s0010 0.5kb upstream 0.5kb upstream 500 false Scaffold932: 36286-36785 Capsella grandiflora
Cagra.0932s0010 0.5kb downstream 0.5kb downstream 2514 true Scaffold932: 33772-36285 Capsella grandiflora
Cagra.0932s0010 0.5kb downstream 0.5kb downstream 500 false Scaffold932: 33772-34271 Capsella grandiflora
Cagra.0932s0010 1.0kb upstream 1.0kb upstream 3014 true Scaffold932: 34272-37285 Capsella grandiflora
Cagra.0932s0010 1.0kb upstream 1.0kb upstream 1000 false Scaffold932: 36286-37285 Capsella grandiflora
Cagra.0932s0010 1.0kb downstream 1.0kb downstream 3014 true Scaffold932: 33272-36285 Capsella grandiflora
Cagra.0932s0010 1.0kb downstream 1.0kb downstream 1000 false Scaffold932: 33272-34271 Capsella grandiflora
Cagra.0932s0010 2.0kb upstream 2.0kb upstream 4014 true Scaffold932: 34272-38285 Capsella grandiflora
Cagra.0932s0010 2.0kb upstream 2.0kb upstream 2000 false Scaffold932: 36286-38285 Capsella grandiflora
Cagra.0932s0010 2.0kb downstream 2.0kb downstream 4014 true Scaffold932: 32272-36285 Capsella grandiflora
Cagra.0932s0010 2.0kb downstream 2.0kb downstream 2000 false Scaffold932: 32272-34271 Capsella grandiflora
Cagra.0932s0010 5.0kb upstream 5.0kb upstream 7014 true Scaffold932: 34272-41285 Capsella grandiflora
Cagra.0932s0010 5.0kb upstream 5.0kb upstream 5000 false Scaffold932: 36286-41285 Capsella grandiflora
Cagra.0932s0010 5.0kb downstream 5.0kb downstream 7014 true Scaffold932: 29272-36285 Capsella grandiflora
Cagra.0932s0010 5.0kb downstream 5.0kb downstream 5000 false Scaffold932: 29272-34271 Capsella grandiflora
Cagra.0932s0010 10.0kb upstream 10.0kb upstream 12014 true Scaffold932: 34272-46285 Capsella grandiflora
Cagra.0932s0010 10.0kb upstream 10.0kb upstream 10000 false Scaffold932: 36286-46285 Capsella grandiflora
Cagra.0932s0010 10.0kb downstream 10.0kb downstream 12014 true Scaffold932: 24272-36285 Capsella grandiflora
Cagra.0932s0010 10.0kb downstream 10.0kb downstream 10000 false Scaffold932: 24272-34271 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122364658 5261 Brassicaceae View MSA
123829988 5264 Brassicales-Malvales View MSA
124349496 5266 SBM View MSA
124250017 5268 Malvidae View MSA
124069751 5270 Rosid View MSA
123749752 5271 Pentapetalae View MSA
122794899 5272 Eudicot View MSA
122047342 5273 Angiosperm View MSA
121310731 5274 Embryophyte View MSA
123348144 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain