Gene : Cagra.0922s0005 C. grandiflora v1.1
Defline:  (1 of 1) PTHR10969:SF36 - AUTOPHAGY-RELATED PROTEIN 8H Genomic Order:  5
Name:  ? Cagra.0922s0005 Secondary Identifier:  ? PAC:28901609
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0922s0005 0.5kb upstream 0.5kb upstream 2029 true Scaffold922: 8308-10336 Capsella grandiflora
Cagra.0922s0005 0.5kb upstream 0.5kb upstream 500 false Scaffold922: 8308-8807 Capsella grandiflora
Cagra.0922s0005 0.5kb downstream 0.5kb downstream 2029 true Scaffold922: 8808-10836 Capsella grandiflora
Cagra.0922s0005 0.5kb downstream 0.5kb downstream 500 false Scaffold922: 10337-10836 Capsella grandiflora
Cagra.0922s0005 1.0kb upstream 1.0kb upstream 2529 true Scaffold922: 7808-10336 Capsella grandiflora
Cagra.0922s0005 1.0kb upstream 1.0kb upstream 1000 false Scaffold922: 7808-8807 Capsella grandiflora
Cagra.0922s0005 1.0kb downstream 1.0kb downstream 2529 true Scaffold922: 8808-11336 Capsella grandiflora
Cagra.0922s0005 1.0kb downstream 1.0kb downstream 1000 false Scaffold922: 10337-11336 Capsella grandiflora
Cagra.0922s0005 2.0kb upstream 2.0kb upstream 3529 true Scaffold922: 6808-10336 Capsella grandiflora
Cagra.0922s0005 2.0kb upstream 2.0kb upstream 2000 false Scaffold922: 6808-8807 Capsella grandiflora
Cagra.0922s0005 2.0kb downstream 2.0kb downstream 3529 true Scaffold922: 8808-12336 Capsella grandiflora
Cagra.0922s0005 2.0kb downstream 2.0kb downstream 2000 false Scaffold922: 10337-12336 Capsella grandiflora
Cagra.0922s0005 5.0kb upstream 5.0kb upstream 6529 true Scaffold922: 3808-10336 Capsella grandiflora
Cagra.0922s0005 5.0kb upstream 5.0kb upstream 5000 false Scaffold922: 3808-8807 Capsella grandiflora
Cagra.0922s0005 5.0kb downstream 5.0kb downstream 6529 true Scaffold922: 8808-15336 Capsella grandiflora
Cagra.0922s0005 5.0kb downstream 5.0kb downstream 5000 false Scaffold922: 10337-15336 Capsella grandiflora
Cagra.0922s0005 10.0kb upstream 10.0kb upstream 10336 true Scaffold922: 1-10336 Capsella grandiflora
Cagra.0922s0005 10.0kb upstream 10.0kb upstream 8807 false Scaffold922: 1-8807 Capsella grandiflora
Cagra.0922s0005 10.0kb downstream 10.0kb downstream 11529 true Scaffold922: 8808-20336 Capsella grandiflora
Cagra.0922s0005 10.0kb downstream 10.0kb downstream 10000 false Scaffold922: 10337-20336 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122363935 5261 Brassicaceae View MSA
123835569 5264 Brassicales-Malvales View MSA
124338704 5266 SBM View MSA
124244916 5268 Malvidae View MSA
124068997 5270 Rosid View MSA
123743187 5271 Pentapetalae View MSA
122792251 5272 Eudicot View MSA
122048918 5273 Angiosperm View MSA
121349541 5274 Embryophyte View MSA
123427174 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain