Gene : Cagra.0922s0012 C. grandiflora v1.1
Defline:  (1 of 2) 1.1.1.25 - Shikimate dehydrogenase / Shikimate:NADP(+) oxidoreductase Genomic Order:  12
Name:  ? Cagra.0922s0012 Secondary Identifier:  ? PAC:28901620
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora ARO-PWY Capsella grandiflora pathologic  
Cgrandiflora PWY-6163 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0922s0012 0.5kb upstream 0.5kb upstream 3820 true Scaffold922: 37402-41221 Capsella grandiflora
Cagra.0922s0012 0.5kb upstream 0.5kb upstream 500 false Scaffold922: 37402-37901 Capsella grandiflora
Cagra.0922s0012 0.5kb downstream 0.5kb downstream 3820 true Scaffold922: 37902-41721 Capsella grandiflora
Cagra.0922s0012 0.5kb downstream 0.5kb downstream 500 false Scaffold922: 41222-41721 Capsella grandiflora
Cagra.0922s0012 1.0kb upstream 1.0kb upstream 4320 true Scaffold922: 36902-41221 Capsella grandiflora
Cagra.0922s0012 1.0kb upstream 1.0kb upstream 1000 false Scaffold922: 36902-37901 Capsella grandiflora
Cagra.0922s0012 1.0kb downstream 1.0kb downstream 4320 true Scaffold922: 37902-42221 Capsella grandiflora
Cagra.0922s0012 1.0kb downstream 1.0kb downstream 1000 false Scaffold922: 41222-42221 Capsella grandiflora
Cagra.0922s0012 2.0kb upstream 2.0kb upstream 5320 true Scaffold922: 35902-41221 Capsella grandiflora
Cagra.0922s0012 2.0kb upstream 2.0kb upstream 2000 false Scaffold922: 35902-37901 Capsella grandiflora
Cagra.0922s0012 2.0kb downstream 2.0kb downstream 4479 true Scaffold922: 37902-42380 Capsella grandiflora
Cagra.0922s0012 2.0kb downstream 2.0kb downstream 1159 false Scaffold922: 41222-42380 Capsella grandiflora
Cagra.0922s0012 5.0kb upstream 5.0kb upstream 8320 true Scaffold922: 32902-41221 Capsella grandiflora
Cagra.0922s0012 5.0kb upstream 5.0kb upstream 5000 false Scaffold922: 32902-37901 Capsella grandiflora
Cagra.0922s0012 5.0kb downstream 5.0kb downstream 4479 true Scaffold922: 37902-42380 Capsella grandiflora
Cagra.0922s0012 5.0kb downstream 5.0kb downstream 1159 false Scaffold922: 41222-42380 Capsella grandiflora
Cagra.0922s0012 10.0kb upstream 10.0kb upstream 13320 true Scaffold922: 27902-41221 Capsella grandiflora
Cagra.0922s0012 10.0kb upstream 10.0kb upstream 10000 false Scaffold922: 27902-37901 Capsella grandiflora
Cagra.0922s0012 10.0kb downstream 10.0kb downstream 4479 true Scaffold922: 37902-42380 Capsella grandiflora
Cagra.0922s0012 10.0kb downstream 10.0kb downstream 1159 false Scaffold922: 41222-42380 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122372861 5261 Brassicaceae View MSA
123830471 5264 Brassicales-Malvales View MSA
124341830 5266 SBM View MSA
124242776 5268 Malvidae View MSA
124068153 5270 Rosid View MSA
123743031 5271 Pentapetalae View MSA
122788487 5272 Eudicot View MSA
122045026 5273 Angiosperm View MSA
121345779 5274 Embryophyte View MSA
123427556 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain