Gene : Cagra.0925s0046 C. grandiflora v1.1
Defline:  (1 of 4) 6.1.1.16 - Cysteine--tRNA ligase / Cysteinyl-tRNA synthetase Genomic Order:  46
Name:  ? Cagra.0925s0046 Secondary Identifier:  ? PAC:28917159
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora TRNA-CHARGING-PWY Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0925s0046 0.5kb upstream 0.5kb upstream 2998 true Scaffold925: 162269-165266 Capsella grandiflora
Cagra.0925s0046 0.5kb upstream 0.5kb upstream 500 false Scaffold925: 162269-162768 Capsella grandiflora
Cagra.0925s0046 0.5kb downstream 0.5kb downstream 2998 true Scaffold925: 162769-165766 Capsella grandiflora
Cagra.0925s0046 0.5kb downstream 0.5kb downstream 500 false Scaffold925: 165267-165766 Capsella grandiflora
Cagra.0925s0046 1.0kb upstream 1.0kb upstream 3498 true Scaffold925: 161769-165266 Capsella grandiflora
Cagra.0925s0046 1.0kb upstream 1.0kb upstream 1000 false Scaffold925: 161769-162768 Capsella grandiflora
Cagra.0925s0046 1.0kb downstream 1.0kb downstream 3498 true Scaffold925: 162769-166266 Capsella grandiflora
Cagra.0925s0046 1.0kb downstream 1.0kb downstream 1000 false Scaffold925: 165267-166266 Capsella grandiflora
Cagra.0925s0046 2.0kb upstream 2.0kb upstream 4498 true Scaffold925: 160769-165266 Capsella grandiflora
Cagra.0925s0046 2.0kb upstream 2.0kb upstream 2000 false Scaffold925: 160769-162768 Capsella grandiflora
Cagra.0925s0046 2.0kb downstream 2.0kb downstream 4498 true Scaffold925: 162769-167266 Capsella grandiflora
Cagra.0925s0046 2.0kb downstream 2.0kb downstream 2000 false Scaffold925: 165267-167266 Capsella grandiflora
Cagra.0925s0046 5.0kb upstream 5.0kb upstream 7498 true Scaffold925: 157769-165266 Capsella grandiflora
Cagra.0925s0046 5.0kb upstream 5.0kb upstream 5000 false Scaffold925: 157769-162768 Capsella grandiflora
Cagra.0925s0046 5.0kb downstream 5.0kb downstream 7498 true Scaffold925: 162769-170266 Capsella grandiflora
Cagra.0925s0046 5.0kb downstream 5.0kb downstream 5000 false Scaffold925: 165267-170266 Capsella grandiflora
Cagra.0925s0046 10.0kb upstream 10.0kb upstream 12498 true Scaffold925: 152769-165266 Capsella grandiflora
Cagra.0925s0046 10.0kb upstream 10.0kb upstream 10000 false Scaffold925: 152769-162768 Capsella grandiflora
Cagra.0925s0046 10.0kb downstream 10.0kb downstream 12498 true Scaffold925: 162769-175266 Capsella grandiflora
Cagra.0925s0046 10.0kb downstream 10.0kb downstream 10000 false Scaffold925: 165267-175266 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122381714 5261 Brassicaceae View MSA
123803392 5264 Brassicales-Malvales View MSA
124300505 5266 SBM View MSA
124250049 5268 Malvidae View MSA
124063129 5270 Rosid View MSA
123736819 5271 Pentapetalae View MSA
122791424 5272 Eudicot View MSA
122050932 5273 Angiosperm View MSA
121350340 5274 Embryophyte View MSA
123427761 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain