Gene : Cagra.0891s0088 C. grandiflora v1.1
Defline:  (1 of 1) PTHR11709:SF103 - LACCASE-16 Genomic Order:  88
Name:  ? Cagra.0891s0088 Secondary Identifier:  ? PAC:28912910
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-5466 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0891s0088 0.5kb upstream 0.5kb upstream 3108 true Scaffold891: 300743-303850 Capsella grandiflora
Cagra.0891s0088 0.5kb upstream 0.5kb upstream 500 false Scaffold891: 303351-303850 Capsella grandiflora
Cagra.0891s0088 0.5kb downstream 0.5kb downstream 3108 true Scaffold891: 300243-303350 Capsella grandiflora
Cagra.0891s0088 0.5kb downstream 0.5kb downstream 500 false Scaffold891: 300243-300742 Capsella grandiflora
Cagra.0891s0088 1.0kb upstream 1.0kb upstream 3608 true Scaffold891: 300743-304350 Capsella grandiflora
Cagra.0891s0088 1.0kb upstream 1.0kb upstream 1000 false Scaffold891: 303351-304350 Capsella grandiflora
Cagra.0891s0088 1.0kb downstream 1.0kb downstream 3608 true Scaffold891: 299743-303350 Capsella grandiflora
Cagra.0891s0088 1.0kb downstream 1.0kb downstream 1000 false Scaffold891: 299743-300742 Capsella grandiflora
Cagra.0891s0088 2.0kb upstream 2.0kb upstream 4608 true Scaffold891: 300743-305350 Capsella grandiflora
Cagra.0891s0088 2.0kb upstream 2.0kb upstream 2000 false Scaffold891: 303351-305350 Capsella grandiflora
Cagra.0891s0088 2.0kb downstream 2.0kb downstream 4608 true Scaffold891: 298743-303350 Capsella grandiflora
Cagra.0891s0088 2.0kb downstream 2.0kb downstream 2000 false Scaffold891: 298743-300742 Capsella grandiflora
Cagra.0891s0088 5.0kb upstream 5.0kb upstream 7608 true Scaffold891: 300743-308350 Capsella grandiflora
Cagra.0891s0088 5.0kb upstream 5.0kb upstream 5000 false Scaffold891: 303351-308350 Capsella grandiflora
Cagra.0891s0088 5.0kb downstream 5.0kb downstream 7608 true Scaffold891: 295743-303350 Capsella grandiflora
Cagra.0891s0088 5.0kb downstream 5.0kb downstream 5000 false Scaffold891: 295743-300742 Capsella grandiflora
Cagra.0891s0088 10.0kb upstream 10.0kb upstream 12608 true Scaffold891: 300743-313350 Capsella grandiflora
Cagra.0891s0088 10.0kb upstream 10.0kb upstream 10000 false Scaffold891: 303351-313350 Capsella grandiflora
Cagra.0891s0088 10.0kb downstream 10.0kb downstream 12608 true Scaffold891: 290743-303350 Capsella grandiflora
Cagra.0891s0088 10.0kb downstream 10.0kb downstream 10000 false Scaffold891: 290743-300742 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122369383 5261 Brassicaceae View MSA
123799768 5264 Brassicales-Malvales View MSA
124297257 5266 SBM View MSA
124149196 5268 Malvidae View MSA
124069794 5270 Rosid View MSA
123752484 5271 Pentapetalae View MSA
122797198 5272 Eudicot View MSA
122050716 5273 Angiosperm View MSA
121350155 5274 Embryophyte View MSA
123428014 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain