Gene : Cagra.0897s0040 C. grandiflora v1.1
Defline:  (1 of 1) PTHR13268:SF2 - AUTOPHAGY-RELATED PROTEIN 18G Genomic Order:  40
Name:  ? Cagra.0897s0040 Secondary Identifier:  ? PAC:28902768
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0897s0040 0.5kb upstream 0.5kb upstream 5937 true Scaffold897: 143329-149265 Capsella grandiflora
Cagra.0897s0040 0.5kb upstream 0.5kb upstream 500 false Scaffold897: 148766-149265 Capsella grandiflora
Cagra.0897s0040 0.5kb downstream 0.5kb downstream 5937 true Scaffold897: 142829-148765 Capsella grandiflora
Cagra.0897s0040 0.5kb downstream 0.5kb downstream 500 false Scaffold897: 142829-143328 Capsella grandiflora
Cagra.0897s0040 1.0kb upstream 1.0kb upstream 6437 true Scaffold897: 143329-149765 Capsella grandiflora
Cagra.0897s0040 1.0kb upstream 1.0kb upstream 1000 false Scaffold897: 148766-149765 Capsella grandiflora
Cagra.0897s0040 1.0kb downstream 1.0kb downstream 6437 true Scaffold897: 142329-148765 Capsella grandiflora
Cagra.0897s0040 1.0kb downstream 1.0kb downstream 1000 false Scaffold897: 142329-143328 Capsella grandiflora
Cagra.0897s0040 2.0kb upstream 2.0kb upstream 7437 true Scaffold897: 143329-150765 Capsella grandiflora
Cagra.0897s0040 2.0kb upstream 2.0kb upstream 2000 false Scaffold897: 148766-150765 Capsella grandiflora
Cagra.0897s0040 2.0kb downstream 2.0kb downstream 7437 true Scaffold897: 141329-148765 Capsella grandiflora
Cagra.0897s0040 2.0kb downstream 2.0kb downstream 2000 false Scaffold897: 141329-143328 Capsella grandiflora
Cagra.0897s0040 5.0kb upstream 5.0kb upstream 10437 true Scaffold897: 143329-153765 Capsella grandiflora
Cagra.0897s0040 5.0kb upstream 5.0kb upstream 5000 false Scaffold897: 148766-153765 Capsella grandiflora
Cagra.0897s0040 5.0kb downstream 5.0kb downstream 10437 true Scaffold897: 138329-148765 Capsella grandiflora
Cagra.0897s0040 5.0kb downstream 5.0kb downstream 5000 false Scaffold897: 138329-143328 Capsella grandiflora
Cagra.0897s0040 10.0kb upstream 10.0kb upstream 15437 true Scaffold897: 143329-158765 Capsella grandiflora
Cagra.0897s0040 10.0kb upstream 10.0kb upstream 10000 false Scaffold897: 148766-158765 Capsella grandiflora
Cagra.0897s0040 10.0kb downstream 10.0kb downstream 15437 true Scaffold897: 133329-148765 Capsella grandiflora
Cagra.0897s0040 10.0kb downstream 10.0kb downstream 10000 false Scaffold897: 133329-143328 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122370747 5261 Brassicaceae View MSA
123832418 5264 Brassicales-Malvales View MSA
124341740 5266 SBM View MSA
124244639 5268 Malvidae View MSA
124066220 5270 Rosid View MSA
123744735 5271 Pentapetalae View MSA
122790134 5272 Eudicot View MSA
122047922 5273 Angiosperm View MSA
121350059 5274 Embryophyte View MSA
123424091 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain