Gene : Cagra.1157s0013 C. grandiflora v1.1
Defline:  (1 of 1) 2.2.1.9 - 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase / SEPHCHC synthase Genomic Order:  13
Name:  ? Cagra.1157s0013 Secondary Identifier:  ? PAC:28919343
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-5837 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.1157s0013 0.5kb upstream 0.5kb upstream 10284 true Scaffold1157: 64762-75045 Capsella grandiflora
Cagra.1157s0013 0.5kb upstream 0.5kb upstream 500 false Scaffold1157: 64762-65261 Capsella grandiflora
Cagra.1157s0013 0.5kb downstream 0.5kb downstream 10284 true Scaffold1157: 65262-75545 Capsella grandiflora
Cagra.1157s0013 0.5kb downstream 0.5kb downstream 500 false Scaffold1157: 75046-75545 Capsella grandiflora
Cagra.1157s0013 1.0kb upstream 1.0kb upstream 10784 true Scaffold1157: 64262-75045 Capsella grandiflora
Cagra.1157s0013 1.0kb upstream 1.0kb upstream 1000 false Scaffold1157: 64262-65261 Capsella grandiflora
Cagra.1157s0013 1.0kb downstream 1.0kb downstream 10784 true Scaffold1157: 65262-76045 Capsella grandiflora
Cagra.1157s0013 1.0kb downstream 1.0kb downstream 1000 false Scaffold1157: 75046-76045 Capsella grandiflora
Cagra.1157s0013 2.0kb upstream 2.0kb upstream 11784 true Scaffold1157: 63262-75045 Capsella grandiflora
Cagra.1157s0013 2.0kb upstream 2.0kb upstream 2000 false Scaffold1157: 63262-65261 Capsella grandiflora
Cagra.1157s0013 2.0kb downstream 2.0kb downstream 11784 true Scaffold1157: 65262-77045 Capsella grandiflora
Cagra.1157s0013 2.0kb downstream 2.0kb downstream 2000 false Scaffold1157: 75046-77045 Capsella grandiflora
Cagra.1157s0013 5.0kb upstream 5.0kb upstream 14784 true Scaffold1157: 60262-75045 Capsella grandiflora
Cagra.1157s0013 5.0kb upstream 5.0kb upstream 5000 false Scaffold1157: 60262-65261 Capsella grandiflora
Cagra.1157s0013 5.0kb downstream 5.0kb downstream 14784 true Scaffold1157: 65262-80045 Capsella grandiflora
Cagra.1157s0013 5.0kb downstream 5.0kb downstream 5000 false Scaffold1157: 75046-80045 Capsella grandiflora
Cagra.1157s0013 10.0kb upstream 10.0kb upstream 19784 true Scaffold1157: 55262-75045 Capsella grandiflora
Cagra.1157s0013 10.0kb upstream 10.0kb upstream 10000 false Scaffold1157: 55262-65261 Capsella grandiflora
Cagra.1157s0013 10.0kb downstream 10.0kb downstream 19784 true Scaffold1157: 65262-85045 Capsella grandiflora
Cagra.1157s0013 10.0kb downstream 10.0kb downstream 10000 false Scaffold1157: 75046-85045 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122361603 5261 Brassicaceae View MSA
123828356 5264 Brassicales-Malvales View MSA
124342017 5266 SBM View MSA
124252749 5268 Malvidae View MSA
124050387 5270 Rosid View MSA
123744882 5271 Pentapetalae View MSA
122788106 5272 Eudicot View MSA
122043367 5273 Angiosperm View MSA
121345465 5274 Embryophyte View MSA
123425711 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain