Gene : Cagra.1164s0003 C. grandiflora v1.1
Defline:  (1 of 3) PTHR28141:SF1 - 2',3'-CYCLIC-NUCLEOTIDE 3'-PHOSPHODIESTERASE Genomic Order:  3
Name:  ? Cagra.1164s0003 Secondary Identifier:  ? PAC:28913096
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.1164s0003 0.5kb upstream 0.5kb upstream 1095 true Scaffold1164: 4325-5419 Capsella grandiflora
Cagra.1164s0003 0.5kb upstream 0.5kb upstream 500 false Scaffold1164: 4325-4824 Capsella grandiflora
Cagra.1164s0003 0.5kb downstream 0.5kb downstream 625 true Scaffold1164: 4825-5449 Capsella grandiflora
Cagra.1164s0003 0.5kb downstream 0.5kb downstream 30 false Scaffold1164: 5420-5449 Capsella grandiflora
Cagra.1164s0003 1.0kb upstream 1.0kb upstream 1595 true Scaffold1164: 3825-5419 Capsella grandiflora
Cagra.1164s0003 1.0kb upstream 1.0kb upstream 1000 false Scaffold1164: 3825-4824 Capsella grandiflora
Cagra.1164s0003 1.0kb downstream 1.0kb downstream 625 true Scaffold1164: 4825-5449 Capsella grandiflora
Cagra.1164s0003 1.0kb downstream 1.0kb downstream 30 false Scaffold1164: 5420-5449 Capsella grandiflora
Cagra.1164s0003 2.0kb upstream 2.0kb upstream 2595 true Scaffold1164: 2825-5419 Capsella grandiflora
Cagra.1164s0003 2.0kb upstream 2.0kb upstream 2000 false Scaffold1164: 2825-4824 Capsella grandiflora
Cagra.1164s0003 2.0kb downstream 2.0kb downstream 625 true Scaffold1164: 4825-5449 Capsella grandiflora
Cagra.1164s0003 2.0kb downstream 2.0kb downstream 30 false Scaffold1164: 5420-5449 Capsella grandiflora
Cagra.1164s0003 5.0kb upstream 5.0kb upstream 5419 true Scaffold1164: 1-5419 Capsella grandiflora
Cagra.1164s0003 5.0kb upstream 5.0kb upstream 4824 false Scaffold1164: 1-4824 Capsella grandiflora
Cagra.1164s0003 5.0kb downstream 5.0kb downstream 625 true Scaffold1164: 4825-5449 Capsella grandiflora
Cagra.1164s0003 5.0kb downstream 5.0kb downstream 30 false Scaffold1164: 5420-5449 Capsella grandiflora
Cagra.1164s0003 10.0kb upstream 10.0kb upstream 5419 true Scaffold1164: 1-5419 Capsella grandiflora
Cagra.1164s0003 10.0kb upstream 10.0kb upstream 4824 false Scaffold1164: 1-4824 Capsella grandiflora
Cagra.1164s0003 10.0kb downstream 10.0kb downstream 625 true Scaffold1164: 4825-5449 Capsella grandiflora
Cagra.1164s0003 10.0kb downstream 10.0kb downstream 30 false Scaffold1164: 5420-5449 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121791954 5273 Angiosperm View MSA
122332371 5261 Brassicaceae Singleton cluster - no MSA
123773446 5264 Brassicales-Malvales Singleton cluster - no MSA
124271931 5266 SBM Singleton cluster - no MSA
124127858 5268 Malvidae Singleton cluster - no MSA
124050533 5270 Rosid View MSA
123619814 5271 Pentapetalae View MSA
122795570 5272 Eudicot View MSA
121063221 5274 Embryophyte View MSA
123102987 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain