Gene : Cagra.1189s0020 C. grandiflora v1.1
Defline:  (1 of 2) PTHR23133 - IMIDAZOLEGLYCEROL-PHOSPHATE DEHYDRATASE HIS7 Genomic Order:  20
Name:  ? Cagra.1189s0020 Secondary Identifier:  ? PAC:28908937
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora HISTSYN-PWY Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.1189s0020 0.5kb upstream 0.5kb upstream 2477 true Scaffold1189: 73952-76428 Capsella grandiflora
Cagra.1189s0020 0.5kb upstream 0.5kb upstream 500 false Scaffold1189: 73952-74451 Capsella grandiflora
Cagra.1189s0020 0.5kb downstream 0.5kb downstream 2477 true Scaffold1189: 74452-76928 Capsella grandiflora
Cagra.1189s0020 0.5kb downstream 0.5kb downstream 500 false Scaffold1189: 76429-76928 Capsella grandiflora
Cagra.1189s0020 1.0kb upstream 1.0kb upstream 2977 true Scaffold1189: 73452-76428 Capsella grandiflora
Cagra.1189s0020 1.0kb upstream 1.0kb upstream 1000 false Scaffold1189: 73452-74451 Capsella grandiflora
Cagra.1189s0020 1.0kb downstream 1.0kb downstream 2977 true Scaffold1189: 74452-77428 Capsella grandiflora
Cagra.1189s0020 1.0kb downstream 1.0kb downstream 1000 false Scaffold1189: 76429-77428 Capsella grandiflora
Cagra.1189s0020 2.0kb upstream 2.0kb upstream 3977 true Scaffold1189: 72452-76428 Capsella grandiflora
Cagra.1189s0020 2.0kb upstream 2.0kb upstream 2000 false Scaffold1189: 72452-74451 Capsella grandiflora
Cagra.1189s0020 2.0kb downstream 2.0kb downstream 3977 true Scaffold1189: 74452-78428 Capsella grandiflora
Cagra.1189s0020 2.0kb downstream 2.0kb downstream 2000 false Scaffold1189: 76429-78428 Capsella grandiflora
Cagra.1189s0020 5.0kb upstream 5.0kb upstream 6977 true Scaffold1189: 69452-76428 Capsella grandiflora
Cagra.1189s0020 5.0kb upstream 5.0kb upstream 5000 false Scaffold1189: 69452-74451 Capsella grandiflora
Cagra.1189s0020 5.0kb downstream 5.0kb downstream 6977 true Scaffold1189: 74452-81428 Capsella grandiflora
Cagra.1189s0020 5.0kb downstream 5.0kb downstream 5000 false Scaffold1189: 76429-81428 Capsella grandiflora
Cagra.1189s0020 10.0kb upstream 10.0kb upstream 11977 true Scaffold1189: 64452-76428 Capsella grandiflora
Cagra.1189s0020 10.0kb upstream 10.0kb upstream 10000 false Scaffold1189: 64452-74451 Capsella grandiflora
Cagra.1189s0020 10.0kb downstream 10.0kb downstream 11977 true Scaffold1189: 74452-86428 Capsella grandiflora
Cagra.1189s0020 10.0kb downstream 10.0kb downstream 10000 false Scaffold1189: 76429-86428 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122378389 5261 Brassicaceae View MSA
123833237 5264 Brassicales-Malvales View MSA
124344750 5266 SBM View MSA
124241761 5268 Malvidae View MSA
124067658 5270 Rosid View MSA
123737408 5271 Pentapetalae View MSA
122786767 5272 Eudicot View MSA
122045110 5273 Angiosperm View MSA
121344413 5274 Embryophyte View MSA
123423926 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain