Gene : Cagra.1060s0003 C. grandiflora v1.1
Defline:  (1 of 1) PTHR11058 - NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 3 Genomic Order:  3
Name:  ? Cagra.1060s0003 Secondary Identifier:  ? PAC:28915267
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-3781 Capsella grandiflora pathologic  
Cgrandiflora PWY-4302 Capsella grandiflora pathologic  
Cgrandiflora PWY-5083 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.1060s0003 0.5kb upstream 0.5kb upstream 1283 true Scaffold1060: 8194-9476 Capsella grandiflora
Cagra.1060s0003 0.5kb upstream 0.5kb upstream 500 false Scaffold1060: 8977-9476 Capsella grandiflora
Cagra.1060s0003 0.5kb downstream 0.5kb downstream 1283 true Scaffold1060: 7694-8976 Capsella grandiflora
Cagra.1060s0003 0.5kb downstream 0.5kb downstream 500 false Scaffold1060: 7694-8193 Capsella grandiflora
Cagra.1060s0003 1.0kb upstream 1.0kb upstream 1783 true Scaffold1060: 8194-9976 Capsella grandiflora
Cagra.1060s0003 1.0kb upstream 1.0kb upstream 1000 false Scaffold1060: 8977-9976 Capsella grandiflora
Cagra.1060s0003 1.0kb downstream 1.0kb downstream 1783 true Scaffold1060: 7194-8976 Capsella grandiflora
Cagra.1060s0003 1.0kb downstream 1.0kb downstream 1000 false Scaffold1060: 7194-8193 Capsella grandiflora
Cagra.1060s0003 2.0kb upstream 2.0kb upstream 2783 true Scaffold1060: 8194-10976 Capsella grandiflora
Cagra.1060s0003 2.0kb upstream 2.0kb upstream 2000 false Scaffold1060: 8977-10976 Capsella grandiflora
Cagra.1060s0003 2.0kb downstream 2.0kb downstream 2783 true Scaffold1060: 6194-8976 Capsella grandiflora
Cagra.1060s0003 2.0kb downstream 2.0kb downstream 2000 false Scaffold1060: 6194-8193 Capsella grandiflora
Cagra.1060s0003 5.0kb upstream 5.0kb upstream 5783 true Scaffold1060: 8194-13976 Capsella grandiflora
Cagra.1060s0003 5.0kb upstream 5.0kb upstream 5000 false Scaffold1060: 8977-13976 Capsella grandiflora
Cagra.1060s0003 5.0kb downstream 5.0kb downstream 5783 true Scaffold1060: 3194-8976 Capsella grandiflora
Cagra.1060s0003 5.0kb downstream 5.0kb downstream 5000 false Scaffold1060: 3194-8193 Capsella grandiflora
Cagra.1060s0003 10.0kb upstream 10.0kb upstream 7674 true Scaffold1060: 8194-15867 Capsella grandiflora
Cagra.1060s0003 10.0kb upstream 10.0kb upstream 6891 false Scaffold1060: 8977-15867 Capsella grandiflora
Cagra.1060s0003 10.0kb downstream 10.0kb downstream 8976 true Scaffold1060: 1-8976 Capsella grandiflora
Cagra.1060s0003 10.0kb downstream 10.0kb downstream 8193 false Scaffold1060: 1-8193 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121780013 5273 Angiosperm View MSA
122332282 5261 Brassicaceae Singleton cluster - no MSA
123773366 5264 Brassicales-Malvales Singleton cluster - no MSA
124271854 5266 SBM Singleton cluster - no MSA
124127801 5268 Malvidae Singleton cluster - no MSA
123856607 5270 Rosid Singleton cluster - no MSA
123744700 5271 Pentapetalae View MSA
122771225 5272 Eudicot View MSA
121051648 5274 Embryophyte View MSA
123091731 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain