Gene : Cagra.1249s0010 C. grandiflora v1.1
Defline:  (1 of 1) PTHR22600//PTHR22600:SF18 - BETA-HEXOSAMINIDASE Genomic Order:  10
Name:  ? Cagra.1249s0010 Secondary Identifier:  ? PAC:28903367
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-6902 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.1249s0010 0.5kb upstream 0.5kb upstream 5974 true Scaffold1249: 41752-47725 Capsella grandiflora
Cagra.1249s0010 0.5kb upstream 0.5kb upstream 500 false Scaffold1249: 41752-42251 Capsella grandiflora
Cagra.1249s0010 0.5kb downstream 0.5kb downstream 5974 true Scaffold1249: 42252-48225 Capsella grandiflora
Cagra.1249s0010 0.5kb downstream 0.5kb downstream 500 false Scaffold1249: 47726-48225 Capsella grandiflora
Cagra.1249s0010 1.0kb upstream 1.0kb upstream 6474 true Scaffold1249: 41252-47725 Capsella grandiflora
Cagra.1249s0010 1.0kb upstream 1.0kb upstream 1000 false Scaffold1249: 41252-42251 Capsella grandiflora
Cagra.1249s0010 1.0kb downstream 1.0kb downstream 6474 true Scaffold1249: 42252-48725 Capsella grandiflora
Cagra.1249s0010 1.0kb downstream 1.0kb downstream 1000 false Scaffold1249: 47726-48725 Capsella grandiflora
Cagra.1249s0010 2.0kb upstream 2.0kb upstream 7474 true Scaffold1249: 40252-47725 Capsella grandiflora
Cagra.1249s0010 2.0kb upstream 2.0kb upstream 2000 false Scaffold1249: 40252-42251 Capsella grandiflora
Cagra.1249s0010 2.0kb downstream 2.0kb downstream 7474 true Scaffold1249: 42252-49725 Capsella grandiflora
Cagra.1249s0010 2.0kb downstream 2.0kb downstream 2000 false Scaffold1249: 47726-49725 Capsella grandiflora
Cagra.1249s0010 5.0kb upstream 5.0kb upstream 10474 true Scaffold1249: 37252-47725 Capsella grandiflora
Cagra.1249s0010 5.0kb upstream 5.0kb upstream 5000 false Scaffold1249: 37252-42251 Capsella grandiflora
Cagra.1249s0010 5.0kb downstream 5.0kb downstream 10474 true Scaffold1249: 42252-52725 Capsella grandiflora
Cagra.1249s0010 5.0kb downstream 5.0kb downstream 5000 false Scaffold1249: 47726-52725 Capsella grandiflora
Cagra.1249s0010 10.0kb upstream 10.0kb upstream 15474 true Scaffold1249: 32252-47725 Capsella grandiflora
Cagra.1249s0010 10.0kb upstream 10.0kb upstream 10000 false Scaffold1249: 32252-42251 Capsella grandiflora
Cagra.1249s0010 10.0kb downstream 10.0kb downstream 15474 true Scaffold1249: 42252-57725 Capsella grandiflora
Cagra.1249s0010 10.0kb downstream 10.0kb downstream 10000 false Scaffold1249: 47726-57725 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122372069 5261 Brassicaceae View MSA
123829142 5264 Brassicales-Malvales View MSA
124337219 5266 SBM View MSA
124240714 5268 Malvidae View MSA
124068580 5270 Rosid View MSA
123738133 5271 Pentapetalae View MSA
122790534 5272 Eudicot View MSA
122047167 5273 Angiosperm View MSA
121346826 5274 Embryophyte View MSA
123428053 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain