Gene : Cagra.1226s0028 C. grandiflora v1.1
Defline:  (1 of 1) 2.5.1.39 - 4-hydroxybenzoate polyprenyltransferase / 4-hydroxybenzoate nonaprenyltransferase Genomic Order:  28
Name:  ? Cagra.1226s0028 Secondary Identifier:  ? PAC:28916581
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-5871 Capsella grandiflora pathologic  
Cgrandiflora PWY-5872 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.1226s0028 0.5kb upstream 0.5kb upstream 4475 true Scaffold1226: 112067-116541 Capsella grandiflora
Cagra.1226s0028 0.5kb upstream 0.5kb upstream 500 false Scaffold1226: 116042-116541 Capsella grandiflora
Cagra.1226s0028 0.5kb downstream 0.5kb downstream 4475 true Scaffold1226: 111567-116041 Capsella grandiflora
Cagra.1226s0028 0.5kb downstream 0.5kb downstream 500 false Scaffold1226: 111567-112066 Capsella grandiflora
Cagra.1226s0028 1.0kb upstream 1.0kb upstream 4975 true Scaffold1226: 112067-117041 Capsella grandiflora
Cagra.1226s0028 1.0kb upstream 1.0kb upstream 1000 false Scaffold1226: 116042-117041 Capsella grandiflora
Cagra.1226s0028 1.0kb downstream 1.0kb downstream 4975 true Scaffold1226: 111067-116041 Capsella grandiflora
Cagra.1226s0028 1.0kb downstream 1.0kb downstream 1000 false Scaffold1226: 111067-112066 Capsella grandiflora
Cagra.1226s0028 2.0kb upstream 2.0kb upstream 5975 true Scaffold1226: 112067-118041 Capsella grandiflora
Cagra.1226s0028 2.0kb upstream 2.0kb upstream 2000 false Scaffold1226: 116042-118041 Capsella grandiflora
Cagra.1226s0028 2.0kb downstream 2.0kb downstream 5975 true Scaffold1226: 110067-116041 Capsella grandiflora
Cagra.1226s0028 2.0kb downstream 2.0kb downstream 2000 false Scaffold1226: 110067-112066 Capsella grandiflora
Cagra.1226s0028 5.0kb upstream 5.0kb upstream 8975 true Scaffold1226: 112067-121041 Capsella grandiflora
Cagra.1226s0028 5.0kb upstream 5.0kb upstream 5000 false Scaffold1226: 116042-121041 Capsella grandiflora
Cagra.1226s0028 5.0kb downstream 5.0kb downstream 8975 true Scaffold1226: 107067-116041 Capsella grandiflora
Cagra.1226s0028 5.0kb downstream 5.0kb downstream 5000 false Scaffold1226: 107067-112066 Capsella grandiflora
Cagra.1226s0028 10.0kb upstream 10.0kb upstream 13975 true Scaffold1226: 112067-126041 Capsella grandiflora
Cagra.1226s0028 10.0kb upstream 10.0kb upstream 10000 false Scaffold1226: 116042-126041 Capsella grandiflora
Cagra.1226s0028 10.0kb downstream 10.0kb downstream 13975 true Scaffold1226: 102067-116041 Capsella grandiflora
Cagra.1226s0028 10.0kb downstream 10.0kb downstream 10000 false Scaffold1226: 102067-112066 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122374084 5261 Brassicaceae View MSA
123828873 5264 Brassicales-Malvales View MSA
124338665 5266 SBM View MSA
124252362 5268 Malvidae View MSA
124066892 5270 Rosid View MSA
123737843 5271 Pentapetalae View MSA
122788354 5272 Eudicot View MSA
122042592 5273 Angiosperm View MSA
121344514 5274 Embryophyte View MSA
123428392 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain